STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Deba_2751ANTAR domain protein with unknown sensor; InterPro IPR005561:IPR011991:IPR011006; KEGG: bgl:bglu_2g09980 response regulator NasT; PFAM: ANTAR domain protein; SPTR: C5AHM2 Response regulator NasT; PFAM: ANTAR domain. (203 aa)    
Predicted Functional Partners:
nifH
Nitrogenase iron protein; The key enzymatic reactions in nitrogen fixation are catalyzed by the nitrogenase complex, which has 2 components: the iron protein and the molybdenum-iron protein; Belongs to the NifH/BchL/ChlL family.
   
  
 0.797
Deba_2714
Ribosomal protein S1; Binds mRNA; thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence.
  
    0.652
Deba_0173
Extracellular ligand-binding receptor; COGs: COG0683 ABC-type branched-chain amino acid transport systems periplasmic component; InterPro IPR001828; KEGG: sfu:Sfum_3400 extracellular ligand-binding receptor; PFAM: Extracellular ligand-binding receptor; SPTR: A0LNS1 Extracellular ligand-binding receptor; PFAM: Receptor family ligand binding region.
  
 
 0.649
Deba_0639
Extracellular ligand-binding receptor; COGs: COG0683 ABC-type branched-chain amino acid transport systems periplasmic component; InterPro IPR000709:IPR001828; KEGG: geo:Geob_3442 extracellular ligand-binding receptor; PFAM: Extracellular ligand-binding receptor; SPTR: B9M5M6 Extracellular ligand-binding receptor; PFAM: Receptor family ligand binding region.
  
 
 0.649
Deba_0640
Extracellular ligand-binding receptor; COGs: COG0683 ABC-type branched-chain amino acid transport systems periplasmic component; InterPro IPR001828; KEGG: app:CAP2UW1_2211 extracellular ligand-binding receptor; PFAM: Extracellular ligand-binding receptor; SPTR: C7RP21 Extracellular ligand-binding receptor; PFAM: Receptor family ligand binding region.
  
 
 0.649
Deba_1015
ABC transporter substrate binding protein precursor; COGs: COG0683 ABC-type branched-chain amino acid transport systems periplasmic component; KEGG: dma:DMR_09050 ABC transporter substrate binding protein precursor; SPTR: C4XK41 ABC transporter substrate binding protein.
  
 
 0.649
Deba_1303
Extracellular ligand-binding receptor; COGs: COG0683 ABC-type branched-chain amino acid transport systems periplasmic component; InterPro IPR001828; KEGG: dvl:Dvul_0562 extracellular ligand-binding receptor; PFAM: Extracellular ligand-binding receptor; SPTR: Q727W0 High-affinity branched-chain amino acid ABC transporter, perisplasmic amino acid binding protein; PFAM: Receptor family ligand binding region.
  
 
 0.649
Deba_2060
Extracellular ligand-binding receptor; COGs: COG0683 ABC-type branched-chain amino acid transport systems periplasmic component; InterPro IPR001828; KEGG: tye:THEYE_A0768 leu/ile/val-binding protein; PFAM: Extracellular ligand-binding receptor; SPTR: Q649G6 Putative uncharacterized protein; PFAM: Receptor family ligand binding region.
  
 
 0.649
Deba_2061
Extracellular ligand-binding receptor; COGs: COG0683 ABC-type branched-chain amino acid transport systems periplasmic component; InterPro IPR001828; KEGG: dal:Dalk_3701 extracellular ligand-binding receptor; PFAM: Extracellular ligand-binding receptor; SPTR: B8FLN5 Extracellular ligand-binding receptor; PFAM: Receptor family ligand binding region.
  
 
 0.649
Deba_2365
Extracellular ligand-binding receptor; COGs: COG0683 ABC-type branched-chain amino acid transport systems periplasmic component; InterPro IPR001828; KEGG: dal:Dalk_3502 extracellular ligand-binding receptor; PFAM: Extracellular ligand-binding receptor; SPTR: B8FBY5 Extracellular ligand-binding receptor; PFAM: Receptor family ligand binding region.
  
 
 0.649
Your Current Organism:
Desulfarculus baarsii
NCBI taxonomy Id: 644282
Other names: D. baarsii DSM 2075, Desulfarculus baarsii 2st 14, Desulfarculus baarsii DSM 2075, Desulfarculus baarsii str. DSM 2075, Desulfarculus baarsii strain DSM 2075
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.