STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Deba_2762KEGG: dat:HRM2_42180 putative phage shock protein PspB; SPTR: C0QD42 Putative phage shock protein PspB; TIGRFAM: phage shock protein B. (78 aa)    
Predicted Functional Partners:
Deba_2761
Phage shock protein C, PspC; InterPro IPR007168:IPR014320; KEGG: dba:Dbac_1223 phage shock protein C, PspC; PFAM: PspC domain protein; SPTR: C7LRU3 Phage shock protein C, PspC; TIGRFAM: phage shock protein C; PFAM: PspC domain; TIGRFAM: phage shock protein C.
       0.795
Deba_2760
InterPro IPR012307:IPR013022; KEGG: paa:Paes_1281 xylose isomerase domain protein TIM barrel; PFAM: Xylose isomerase domain protein TIM barrel; SPTR: B4S8B9 Xylose isomerase domain protein TIM barrel; PFAM: Xylose isomerase-like TIM barrel.
       0.697
Deba_2763
COGs: COG1842 Phage shock protein A (IM30) suppresses sigma54-dependent transcription; InterPro IPR007157; KEGG: dat:HRM2_42190 PspA2; PFAM: PspA/IM30 family protein; SPTR: C0QD43 PspA2; PFAM: PspA/IM30 family; TIGRFAM: phage shock protein A.
       0.631
Deba_2759
Ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent; Catalyzes the reduction of ribonucleotides to deoxyribonucleotides. May function to provide a pool of deoxyribonucleotide precursors for DNA repair during oxygen limitation and/or for immediate growth after restoration of oxygen.
       0.604
Deba_2758
KEGG: gur:Gura_1503 hypothetical protein; SPTR: Q0EY64 Putative uncharacterized protein; PFAM: Rho termination factor, N-terminal domain.
       0.537
Deba_2757
Hypothetical protein.
       0.424
Your Current Organism:
Desulfarculus baarsii
NCBI taxonomy Id: 644282
Other names: D. baarsii DSM 2075, Desulfarculus baarsii 2st 14, Desulfarculus baarsii DSM 2075, Desulfarculus baarsii str. DSM 2075, Desulfarculus baarsii strain DSM 2075
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.