STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Deba_2800Hypothetical protein; SPTR: C5SGD3 Glycosyl hydrolase family 88. (93 aa)    
Predicted Functional Partners:
Deba_2799
InterPro IPR018711; KEGG: sfu:Sfum_0247 hypothetical protein; PFAM: Protein of unknown function DUF2233, periplasmic; SPTR: A0LEU6 Putative uncharacterized protein; PFAM: Predicted periplasmic protein (DUF2233).
       0.535
Deba_2801
KEGG: eba:ebB187 hypothetical protein; SPTR: Q5P0N5 Putative uncharacterized protein.
       0.409
Deba_2802
GCN5-related N-acetyltransferase; InterPro IPR000182:IPR016181; KEGG: sat:SYN_01678 acetyltransferase (GNAT) family protein; PFAM: GCN5-related N-acetyltransferase; SPTR: Q2LXS4 Acetyltransferase (GNAT) family protein; PFAM: Acetyltransferase (GNAT) family.
       0.409
Your Current Organism:
Desulfarculus baarsii
NCBI taxonomy Id: 644282
Other names: D. baarsii DSM 2075, Desulfarculus baarsii 2st 14, Desulfarculus baarsii DSM 2075, Desulfarculus baarsii str. DSM 2075, Desulfarculus baarsii strain DSM 2075
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.