STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Deba_2804Hypothetical protein; InterPro IPR003115; KEGG: rsk:RSKD131_4067 DNA methylase N-4/N-6; SPTR: B9KV49 DNA methylase N-4/N-6; PFAM: ParB-like nuclease domain. (122 aa)    
Predicted Functional Partners:
sucD
succinyl-CoA synthetase, alpha subunit; Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit.
  
    0.491
sucC
succinyl-CoA synthetase, beta subunit; Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The beta subunit provides nucleotide specificity of the enzyme and binds the substrate succinate, while the binding sites for coenzyme A and phosphate are found in the alpha subunit.
   
    0.489
Deba_2803
Hypothetical protein; KEGG: sat:SYN_00563 putative cytoplasmic protein; SPTR: Q2LSC7 Hypothetical cytosolic protein; PFAM: Putative transposon-encoded protein (DUF2080).
       0.439
Deba_2801
KEGG: eba:ebB187 hypothetical protein; SPTR: Q5P0N5 Putative uncharacterized protein.
       0.412
Deba_2802
GCN5-related N-acetyltransferase; InterPro IPR000182:IPR016181; KEGG: sat:SYN_01678 acetyltransferase (GNAT) family protein; PFAM: GCN5-related N-acetyltransferase; SPTR: Q2LXS4 Acetyltransferase (GNAT) family protein; PFAM: Acetyltransferase (GNAT) family.
       0.412
Your Current Organism:
Desulfarculus baarsii
NCBI taxonomy Id: 644282
Other names: D. baarsii DSM 2075, Desulfarculus baarsii 2st 14, Desulfarculus baarsii DSM 2075, Desulfarculus baarsii str. DSM 2075, Desulfarculus baarsii strain DSM 2075
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.