STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
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Cooccurrence
Coexpression
Experiments
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Textmining
[Homology]
Score
ubiEUbiquinone/menaquinone biosynthesis methyltransferase; Methyltransferase required for the conversion of demethylmenaquinol (DMKH2) to menaquinol (MKH2) and the conversion of 2-polyprenyl-6-methoxy-1,4-benzoquinol (DDMQH2) to 2-polyprenyl-3- methyl-6-methoxy-1,4-benzoquinol (DMQH2). (240 aa)    
Predicted Functional Partners:
Deba_0532
NAD(P)H dehydrogenase (quinone); COGs: COG2249 Putative NADPH-quinone reductase (modulator of drug activity B); InterPro IPR003680; KEGG: ank:AnaeK_0029 NAD(P)H dehydrogenase (quinone); PFAM: NAD(P)H dehydrogenase (quinone); SPTR: B4UKI1 NAD(P)H dehydrogenase (Quinone); PFAM: Flavodoxin-like fold.
     
 0.900
Deba_1376
Flavoprotein WrbA; COGs: COG0655 Multimeric flavodoxin WrbA; InterPro IPR008254:IPR010089; KEGG: eba:ebA2303 TrpR binding protein WrbA; PFAM: flavodoxin/nitric oxide synthase; SPTR: Q5P5L5 Flavoprotein wrbA; TIGRFAM: flavoprotein WrbA; PFAM: NADPH-dependent FMN reductase; TIGRFAM: NAD(P)H:quinone oxidoreductase, type IV.
     
  0.900
Deba_1858
Flavodoxin/nitric oxide synthase; COGs: COG0655 Multimeric flavodoxin WrbA; InterPro IPR008254; KEGG: nth:Nther_0880 flavodoxin/nitric oxide synthase; PFAM: flavodoxin/nitric oxide synthase; SPTR: B2A899 Flavodoxin/nitric oxide synthase; PFAM: NADPH-dependent FMN reductase.
     
  0.900
Deba_1159
UbiD family decarboxylase; COGs: COG0043 3-polyprenyl-4-hydroxybenzoate decarboxylase and related decarboxylase; InterPro IPR002830; KEGG: hmo:HM1_1945 3-octaprenyl-4-hydroxybenzoate carboxy-lyase, putative; PFAM: Carboxylyase-related protein; SPTR: B0TFS3 3-octaprenyl-4-hydroxybenzoate carboxy-lyase, putative; TIGRFAM: UbiD family decarboxylase; PFAM: 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; TIGRFAM: UbiD family decarboxylases; Belongs to the UbiD family.
 
  
 0.817
Deba_2807
KEGG: ade:Adeh_1251 hypothetical protein; SPTR: Q2IQE6 Putative uncharacterized protein.
       0.789
Deba_2808
Radical SAM domain protein; COGs: COG1032 Fe-S oxidoreductase; InterPro IPR007197:IPR006638:IPR013785; KEGG: pca:Pcar_2195 Fe-S oxidoreductase; PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; SPTR: Q3A2H3 Predicted Fe-S oxidoreductase; PFAM: Radical SAM superfamily.
  
    0.777
Deba_1194
Methyltransferase type 11; COGs: COG2226 Methylase involved in ubiquinone/menaquinone biosynthesis; InterPro IPR013216; KEGG: gvi:glr2042 hypothetical protein; PFAM: Methyltransferase type 11; SPTR: Q7NIZ0 Glr2042 protein; PFAM: Methyltransferase domain.
  
     0.563
Deba_2809
KEGG: atc:AGR_pAT_436 hypothetical protein; SPTR: Q7D3E4 Transcriptional regulator, LysR family.
       0.548
Deba_2805
Hypothetical protein; KEGG: mta:Moth_2083 copper amine oxidase-like; SPTR: Q2RGR3 Copper amine oxidase-like.
       0.503
Deba_0555
Polyprenyl synthetase; COGs: COG0142 Geranylgeranyl pyrophosphate synthase; InterPro IPR000092:IPR008949; KEGG: gbm:Gbem_3415 Polyprenyl synthetase; PFAM: Polyprenyl synthetase; SPTR: B5EBB6 Polyprenyl synthetase; PFAM: Polyprenyl synthetase; Belongs to the FPP/GGPP synthase family.
 
  
 0.493
Your Current Organism:
Desulfarculus baarsii
NCBI taxonomy Id: 644282
Other names: D. baarsii DSM 2075, Desulfarculus baarsii 2st 14, Desulfarculus baarsii DSM 2075, Desulfarculus baarsii str. DSM 2075, Desulfarculus baarsii strain DSM 2075
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