STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Deba_2808Radical SAM domain protein; COGs: COG1032 Fe-S oxidoreductase; InterPro IPR007197:IPR006638:IPR013785; KEGG: pca:Pcar_2195 Fe-S oxidoreductase; PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; SPTR: Q3A2H3 Predicted Fe-S oxidoreductase; PFAM: Radical SAM superfamily. (605 aa)    
Predicted Functional Partners:
Deba_2807
KEGG: ade:Adeh_1251 hypothetical protein; SPTR: Q2IQE6 Putative uncharacterized protein.
 
     0.807
ubiE
Ubiquinone/menaquinone biosynthesis methyltransferase; Methyltransferase required for the conversion of demethylmenaquinol (DMKH2) to menaquinol (MKH2) and the conversion of 2-polyprenyl-6-methoxy-1,4-benzoquinol (DDMQH2) to 2-polyprenyl-3- methyl-6-methoxy-1,4-benzoquinol (DMQH2).
  
    0.777
Deba_0461
Sigma54 specific transcriptional regulator, Fis family; COGs: COG3829 Transcriptional regulator containing PAS AAA-type ATPase and DNA-binding domains; InterProIPR010523:IPR004096:IPR002078:IPR002197:IPR 009057:IPR003593:IPR020441; KEGG: dal:Dalk_3884 sigma54 specific transcriptional regulator, Fis family; PFAM: sigma-54 factor interaction domain-containing protein; 4-vinyl reductase 4VR; Activator of aromatic catabolism; helix-turn-helix Fis-type; SMART: AAA ATPase; SPTR: B8FCF2 Sigma54 specific transcriptional regulator, Fis family; PFAM: Activator of aromatic catabolism; Bacterial r [...]
  
  
 0.688
Deba_2809
KEGG: atc:AGR_pAT_436 hypothetical protein; SPTR: Q7D3E4 Transcriptional regulator, LysR family.
       0.552
Deba_2805
Hypothetical protein; KEGG: mta:Moth_2083 copper amine oxidase-like; SPTR: Q2RGR3 Copper amine oxidase-like.
       0.503
Deba_1129
Oxygen-independent coproporphyrinogen III oxidase; Probably acts as a heme chaperone, transferring heme to an unknown acceptor. Binds one molecule of heme per monomer, possibly covalently. Binds 1 [4Fe-4S] cluster. The cluster is coordinated with 3 cysteines and an exchangeable S-adenosyl-L-methionine. Belongs to the anaerobic coproporphyrinogen-III oxidase family.
  
  
 0.400
Your Current Organism:
Desulfarculus baarsii
NCBI taxonomy Id: 644282
Other names: D. baarsii DSM 2075, Desulfarculus baarsii 2st 14, Desulfarculus baarsii DSM 2075, Desulfarculus baarsii str. DSM 2075, Desulfarculus baarsii strain DSM 2075
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