STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Deba_2818Extracellular solute-binding protein family 3; COGs: COG0834 ABC-type amino acid transport/signal transduction systems periplasmic component/domain; InterPro IPR001638; KEGG: dvm:DvMF_2325 ectoine/hydroxyectoine ABC transporter solute-binding protein; PFAM: extracellular solute-binding protein family 3; SMART: extracellular solute-binding protein family 3; SPTR: C5S8R5 Extracellular solute-binding protein family 3; PFAM: Bacterial extracellular solute-binding proteins, family 3; TIGRFAM: ectoine/hydroxyectoine ABC transporter solute-binding protein. (286 aa)    
Predicted Functional Partners:
Deba_2817
COGs: COG4191 Signal transduction histidine kinase regulating C4-dicarboxylate transport system; InterProIPR013655:IPR013767:IPR013656:IPR003661:IPR 003594:IPR001789:IPR000014:IPR001610:IPR005467:IPR000700:I PR004358:IPR011006:IPR009082; KEGG: drt:Dret_1152 PAS/PAC sensor hybrid histidine kinase; PFAM: ATP-binding region ATPase domain protein; PAS fold-3 domain protein; PAS fold domain protein; PAS fold-4 domain protein; histidine kinase A domain protein; response regulator receiver; SMART: ATP-binding region ATPase domain protein; PAC repeat-containing protein; PAS domain containing p [...]
   
 
 0.829
Deba_2618
Extracellular solute-binding protein family 3; COGs: COG0834 ABC-type amino acid transport/signal transduction systems periplasmic component/domain; InterPro IPR001638; KEGG: dba:Dbac_1818 extracellular solute-binding protein family 3; PFAM: extracellular solute-binding protein family 3; SMART: extracellular solute-binding protein family 3; SPTR: A4A5S6 Bacterial extracellular solute-binding protein, family 3; PFAM: Bacterial extracellular solute-binding proteins, family 3.
  
     0.656
Deba_1290
COGs: COG0642 Signal transduction histidine kinase; InterProIPR001789:IPR013767:IPR003018:IPR013656:IPR 003661:IPR003594:IPR008207:IPR005467:IPR000014:IPR000700:I PR004358:IPR001610:IPR011006:IPR009082; KEGG: dvm:DvMF_1096 multi-sensor hybrid histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; response regulator receiver; PAS fold domain protein; GAF domain protein; PAS fold-4 domain protein; Hpt domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; response regulator receiver; PAS domain con [...]
     
 0.652
Deba_2819
Transcriptional regulator, TetR family; COGs: COG1309 Transcriptional regulator; InterPro IPR001647:IPR012287:IPR009057:IPR011075; KEGG: scl:sce1733 HTH-type transcriptional regulator AcrR; PFAM: regulatory protein TetR; SPTR: A9FIV1 HTH-type transcriptional regulator acrR; PFAM: Bacterial regulatory proteins, tetR family.
   
 
 0.562
Deba_2821
KEGG: fsu:Fisuc_0003 hypothetical protein; SPTR: C9RIX4 Putative uncharacterized protein.
  
    0.531
Deba_2311
Flagellar basal body-associated protein FliL; Controls the rotational direction of flagella during chemotaxis; Belongs to the FliL family.
    
 
 0.527
Deba_2820
COGs: COG1033 exporter of the RND superfamily protein; InterPro IPR000731; KEGG: hor:Hore_08450 efflux transporter, putative, hydrophobe/amphiphile efflux-3 (HAE3) family; SPTR: B8CWD3 Efflux transporter, putative, hydrophobe/amphiphile efflux-3 (HAE3) family; PFAM: MMPL family; TIGRFAM: The (Largely Archaeal Putative) Hydrophobe/Amphiphile Efflux-3 (HAE3) Family.
       0.504
Deba_2822
KEGG: fsu:Fisuc_0005 hypothetical protein; SPTR: C9RIX6 Putative uncharacterized protein.
       0.455
Deba_1908
SSS sodium solute transporter superfamily; COGs: COG0591 Na+/proline symporter; InterPro IPR018212:IPR001734:IPR019900; KEGG: dsa:Desal_1510 Na+/solute symporter; PFAM: Na+/solute symporter; SPTR: C6BS96 Na+/solute symporter; TIGRFAM: SSS sodium solute transporter superfamily; PFAM: Sodium:solute symporter family; TIGRFAM: SSS sodium solute transporter superfamily; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.
 
 
 0.453
argG
COGs: COG0137 Argininosuccinate synthase; InterPro IPR018223:IPR001518:IPR014729; KEGG: dal:Dalk_0409 argininosuccinate synthase; PFAM: argininosuccinate synthase; PRIAM: Argininosuccinate synthase; SPTR: B8FH30 Argininosuccinate synthase; TIGRFAM: argininosuccinate synthase; PFAM: Arginosuccinate synthase; TIGRFAM: argininosuccinate synthase; Belongs to the argininosuccinate synthase family. Type 1 subfamily.
  
  
 0.452
Your Current Organism:
Desulfarculus baarsii
NCBI taxonomy Id: 644282
Other names: D. baarsii DSM 2075, Desulfarculus baarsii 2st 14, Desulfarculus baarsii DSM 2075, Desulfarculus baarsii str. DSM 2075, Desulfarculus baarsii strain DSM 2075
Server load: low (12%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.