STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Deba_2819Transcriptional regulator, TetR family; COGs: COG1309 Transcriptional regulator; InterPro IPR001647:IPR012287:IPR009057:IPR011075; KEGG: scl:sce1733 HTH-type transcriptional regulator AcrR; PFAM: regulatory protein TetR; SPTR: A9FIV1 HTH-type transcriptional regulator acrR; PFAM: Bacterial regulatory proteins, tetR family. (213 aa)    
Predicted Functional Partners:
Deba_2820
COGs: COG1033 exporter of the RND superfamily protein; InterPro IPR000731; KEGG: hor:Hore_08450 efflux transporter, putative, hydrophobe/amphiphile efflux-3 (HAE3) family; SPTR: B8CWD3 Efflux transporter, putative, hydrophobe/amphiphile efflux-3 (HAE3) family; PFAM: MMPL family; TIGRFAM: The (Largely Archaeal Putative) Hydrophobe/Amphiphile Efflux-3 (HAE3) Family.
 
     0.810
Deba_2821
KEGG: fsu:Fisuc_0003 hypothetical protein; SPTR: C9RIX4 Putative uncharacterized protein.
     
 0.781
Deba_2822
KEGG: fsu:Fisuc_0005 hypothetical protein; SPTR: C9RIX6 Putative uncharacterized protein.
 
     0.765
Deba_0087
Transcriptional regulator, TetR family; COGs: COG1309 Transcriptional regulator; InterProIPR001647:IPR011075:IPR009057:IPR012287:IPR 015893; KEGG: dal:Dalk_2545 transcriptional regulator, TetR family; PFAM: regulatory protein TetR; SPTR: B8FFH8 Transcriptional regulator, TetR family; PFAM: YsiA-like protein, C-terminal region; Bacterial regulatory proteins, tetR family.
  
     0.693
Deba_0791
Transcriptional regulator, TetR family; COGs: COG1309 Transcriptional regulator; InterProIPR001647:IPR012287:IPR015893:IPR011075:IPR 009057:IPR013570; KEGG: dal:Dalk_3280 transcriptional regulator, TetR family; PFAM: regulatory protein TetR; Tetracycline transcriptional regulator YsiA domain protein; SPTR: B8FJ43 Transcriptional regulator, TetR family; PFAM: YsiA-like protein, C-terminal region; Bacterial regulatory proteins, tetR family.
  
     0.653
Deba_2815
Transcriptional regulator, TetR family; InterPro IPR001647:IPR012287:IPR009057:IPR011075; KEGG: dat:HRM2_21660 HTH-type transcriptional regulator; PFAM: regulatory protein TetR; SPTR: C0QDK0 HTH-type transcriptional regulator; PFAM: Bacterial regulatory proteins, tetR family.
  
     0.603
Deba_2817
COGs: COG4191 Signal transduction histidine kinase regulating C4-dicarboxylate transport system; InterProIPR013655:IPR013767:IPR013656:IPR003661:IPR 003594:IPR001789:IPR000014:IPR001610:IPR005467:IPR000700:I PR004358:IPR011006:IPR009082; KEGG: drt:Dret_1152 PAS/PAC sensor hybrid histidine kinase; PFAM: ATP-binding region ATPase domain protein; PAS fold-3 domain protein; PAS fold domain protein; PAS fold-4 domain protein; histidine kinase A domain protein; response regulator receiver; SMART: ATP-binding region ATPase domain protein; PAC repeat-containing protein; PAS domain containing p [...]
   
 
 0.581
Deba_2818
Extracellular solute-binding protein family 3; COGs: COG0834 ABC-type amino acid transport/signal transduction systems periplasmic component/domain; InterPro IPR001638; KEGG: dvm:DvMF_2325 ectoine/hydroxyectoine ABC transporter solute-binding protein; PFAM: extracellular solute-binding protein family 3; SMART: extracellular solute-binding protein family 3; SPTR: C5S8R5 Extracellular solute-binding protein family 3; PFAM: Bacterial extracellular solute-binding proteins, family 3; TIGRFAM: ectoine/hydroxyectoine ABC transporter solute-binding protein.
   
 
 0.562
Deba_0777
Transcriptional regulator, TetR family; InterPro IPR001647:IPR012287:IPR009057; KEGG: dal:Dalk_2753 transcriptional regulator, TetR family; PFAM: regulatory protein TetR; SPTR: B8FKS3 Transcriptional regulator, TetR family; PFAM: Bacterial regulatory proteins, tetR family.
  
     0.481
Deba_1782
InterPro IPR009057:IPR001647:IPR012287; KEGG: mpt:Mpe_A2962 TetR family transcriptional regulator; PFAM: regulatory protein TetR; SPTR: C5SCW5 Transcriptional regulator, TetR family; PFAM: Bacterial regulatory proteins, tetR family.
  
     0.463
Your Current Organism:
Desulfarculus baarsii
NCBI taxonomy Id: 644282
Other names: D. baarsii DSM 2075, Desulfarculus baarsii 2st 14, Desulfarculus baarsii DSM 2075, Desulfarculus baarsii str. DSM 2075, Desulfarculus baarsii strain DSM 2075
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.