STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Deba_2824Flavodoxin/nitric oxide synthase; COGs: COG0426 flavoprotein; InterPro IPR008254:IPR016440; KEGG: ppd:Ppro_1203 metallo-beta-lactamase/flavodoxin domain-containing protein; PFAM: flavodoxin/nitric oxide synthase; SPTR: A1ANA4 Beta-lactamase domain protein; PFAM: Flavodoxin; Metallo-beta-lactamase superfamily. (396 aa)    
Predicted Functional Partners:
Deba_0467
COGs: COG1251 NAD(P)H-nitrite reductase; InterPro IPR013027:IPR000103; KEGG: dal:Dalk_2354 FAD-dependent pyridine nucleotide-disulphide oxidoreductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; SPTR: B8FAW1 FAD-dependent pyridine nucleotide-disulphide oxidoreductase; PFAM: Pyridine nucleotide-disulphide oxidoreductase.
 
  
 0.836
Deba_2823
Hypothetical protein; InterPro IPR018493; KEGG: cyt:cce_0960 hypothetical protein; SPTR: C8Q4V3 Lipoprotein; manually curated; PFAM: Orthopoxvirus protein of unknown function (DUF830).
 
     0.816
Deba_0689
Fe-S cluster assembly protein NifU; May be involved in the formation or repair of [Fe-S] clusters present in iron-sulfur proteins.
  
  
 0.735
dfx
Desulfoferrodoxin; Catalyzes the one-electron reduction of superoxide anion radical to hydrogen peroxide at a nonheme ferrous iron center. Plays a fundamental role in case of oxidative stress via its superoxide detoxification activity.
 
  
 0.685
Deba_2825
Cupin 2 conserved barrel domain protein; InterPro IPR013096:IPR010462:IPR014710:IPR011051; KEGG: dal:Dalk_1201 cupin 2 conserved barrel domain protein; PFAM: Cupin 2 conserved barrel domain protein; SPTR: C0GMJ0 Cupin 2 conserved barrel domain protein; PFAM: Cupin domain.
     
 0.619
Deba_0054
DGC domain protein; COGs: COG4273 conserved hypothetical protein; InterPro IPR014958; KEGG: sfu:Sfum_3599 hypothetical protein; PFAM: DGC domain protein; SPTR: A0LPB7 Putative uncharacterized protein; manually curated; PFAM: DGC domain.
   
  
 0.495
Deba_2720
Rubredoxin-type Fe(Cys)4 protein; COGs: COG1773 Rubredoxin; InterPro IPR018527:IPR004039:IPR001052; KEGG: dba:Dbac_2021 rubredoxin-type Fe(Cys)4 protein; PFAM: Rubredoxin-type Fe(Cys)4 protein; SPTR: C7LND8 Rubredoxin; PFAM: Rubredoxin.
 
  
 0.444
Deba_2040
InterPro IPR007419; KEGG: tai:Taci_1540 BFD domain protein (2Fe-2S)-binding domain protein; PFAM: BFD domain protein [2Fe-2S]-binding domain protein; SPTR: D1B6X0 BFD domain protein (2Fe-2S)-binding domain protein; PFAM: BFD-like [2Fe-2S] binding domain.
  
  
 0.439
hcp
Hybrid cluster protein; Catalyzes the reduction of hydroxylamine to form NH(3) and H(2)O.
 
   
 0.400
Your Current Organism:
Desulfarculus baarsii
NCBI taxonomy Id: 644282
Other names: D. baarsii DSM 2075, Desulfarculus baarsii 2st 14, Desulfarculus baarsii DSM 2075, Desulfarculus baarsii str. DSM 2075, Desulfarculus baarsii strain DSM 2075
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.