STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Deba_2836Patched family protein; COGs: COG1033 exporter of the RND superfamily protein; InterPro IPR003392:IPR000731; KEGG: dal:Dalk_0753 patched family protein; PFAM: Patched family protein; SPTR: B8FHP1 Patched family protein; PFAM: Patched family; MMPL family. (804 aa)    
Predicted Functional Partners:
Deba_2835
KEGG: dol:Dole_0396 hypothetical protein; SPTR: A8ZT42 Putative uncharacterized protein; PFAM: Protein of unknown function (DUF1329).
  
 0.978
Deba_2834
KEGG: dol:Dole_2689 SH3 type 3 domain-containing protein; SPTR: A8ZXB3 SH3 type 3 domain protein; PFAM: Protein of unknown function (DUF1302).
 
     0.940
Deba_2247
KEGG: tde:TDE2009 hypothetical protein; SPTR: C1SMG9 Putative uncharacterized protein; PFAM: Protein of unknown function (DUF1329).
 
  
 0.795
Deba_2821
KEGG: fsu:Fisuc_0003 hypothetical protein; SPTR: C9RIX4 Putative uncharacterized protein.
 
  
 0.790
Deba_1188
KEGG: ppd:Ppro_1941 hypothetical protein; SPTR: A1AQD0 Putative uncharacterized protein; PFAM: Protein of unknown function (DUF1329).
 
  
 0.786
Deba_2250
KEGG: pgn:PGN_1918 hypothetical protein; SPTR: C1SMH0 Putative uncharacterized protein.
 
   
 0.695
Deba_2822
KEGG: fsu:Fisuc_0005 hypothetical protein; SPTR: C9RIX6 Putative uncharacterized protein.
 
   
 0.663
Deba_2837
InterPro IPR000835:IPR011991; KEGG: cac:CAC0559 MarR family transcriptional regulator; PFAM: regulatory protein MarR; SMART: regulatory protein MarR; SPTR: Q97LK1 Transcriptional regulator, MarR/EmrR family; PFAM: MarR family.
       0.646
Deba_1187
KEGG: ppd:Ppro_1942 hypothetical protein; SPTR: A1AQD1 Putative uncharacterized protein.
 
   
 0.620
Your Current Organism:
Desulfarculus baarsii
NCBI taxonomy Id: 644282
Other names: D. baarsii DSM 2075, Desulfarculus baarsii 2st 14, Desulfarculus baarsii DSM 2075, Desulfarculus baarsii str. DSM 2075, Desulfarculus baarsii strain DSM 2075
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.