STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
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Gene Fusion
Cooccurrence
Coexpression
Experiments
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Textmining
[Homology]
Score
Deba_2865Peptidase U62 modulator of DNA gyrase; COGs: COG0312 Zn-dependent protease and their inactivated homologs; InterPro IPR002510:IPR008263; KEGG: gme:Gmet_0947 peptidase U62, modulator of DNA gyrase; PFAM: peptidase U62 modulator of DNA gyrase; SPTR: C6MMK6 Peptidase U62 modulator of DNA gyrase; PFAM: Putative modulator of DNA gyrase. (447 aa)    
Predicted Functional Partners:
Deba_1419
Peptidase U62 modulator of DNA gyrase; COGs: COG0312 Zn-dependent protease and their inactivated homologs; InterPro IPR002510; KEGG: ade:Adeh_3846 microcin-processing peptidase 2; PFAM: peptidase U62 modulator of DNA gyrase; SPTR: Q2IGA1 Putative uncharacterized protein; PFAM: Putative modulator of DNA gyrase.
 
 
0.808
Deba_1532
Peptidase U62 modulator of DNA gyrase; COGs: COG0312 Zn-dependent protease and their inactivated homologs; InterPro IPR002510; KEGG: gur:Gura_3701 peptidase U62, modulator of DNA gyrase; PFAM: peptidase U62 modulator of DNA gyrase; SPTR: A5G7T6 Peptidase U62, modulator of DNA gyrase; PFAM: Putative modulator of DNA gyrase.
 
 
0.799
Deba_2864
GCN5-related N-acetyltransferase; COGs: COG1246 N-acetylglutamate synthase and related acetyltransferase; InterPro IPR000182:IPR016181; KEGG: sfu:Sfum_1203 GCN5-related N-acetyltransferase; PFAM: GCN5-related N-acetyltransferase; SPTR: A0LHJ4 N-acetylglutamate synthase; PFAM: Acetyltransferase (GNAT) family.
       0.783
Deba_2863
KEGG: dal:Dalk_0732 hypothetical protein; SPTR: B8FK09 Putative uncharacterized protein.
       0.666
Deba_2866
Peptidase M23; COGs: COG0739 Membrane protein related to metalloendopeptidase; InterPro IPR016047:IPR011055; KEGG: dol:Dole_2484 peptidase M23B; PFAM: Peptidase M23; SPTR: A8ZW54 Peptidase M23B; PFAM: Peptidase family M23.
       0.501
argS
COGs: COG0018 Arginyl-tRNA synthetase; InterProIPR005148:IPR015945:IPR008909:IPR014729:IPR 009080:IPR001412:IPR001278; KEGG: pca:Pcar_0742 arginyl-tRNA synthetase; PFAM: Arginyl-tRNA synthetase, class Ic, core; arginyl tRNA synthetase domain protein; DALR anticodon binding domain protein; PRIAM: Arginine--tRNA ligase; SPTR: Q3A6K6 Arginyl-tRNA synthetase; TIGRFAM: arginyl-tRNA synthetase; PFAM: DALR anticodon binding domain; Arginyl tRNA synthetase N terminal domain; tRNA synthetases class I (R); TIGRFAM: arginyl-tRNA synthetase.
       0.424
Deba_2860
Hypothetical protein; KEGG: sat:SYN_03024 putative cytoplasmic protein; SPTR: Q2LVV4 Hypothetical cytosolic protein.
       0.404
Deba_2862
Sporulation domain protein; InterPro IPR007730; KEGG: dol:Dole_3214 sporulation domain-containing protein; PFAM: Sporulation domain protein; SPTR: A9A098 Sporulation domain protein; PFAM: Sporulation related domain.
       0.404
Your Current Organism:
Desulfarculus baarsii
NCBI taxonomy Id: 644282
Other names: D. baarsii DSM 2075, Desulfarculus baarsii 2st 14, Desulfarculus baarsii DSM 2075, Desulfarculus baarsii str. DSM 2075, Desulfarculus baarsii strain DSM 2075
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