STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Deba_2877COGs: COG1305 Transglutaminase-like protein; InterPro IPR002931; KEGG: dal:Dalk_0469 transglutaminase domain protein; PFAM: transglutaminase domain protein; SMART: transglutaminase domain protein; SPTR: B8FH88 Transglutaminase domain protein; PFAM: Transglutaminase-like superfamily. (220 aa)    
Predicted Functional Partners:
pyrD
Dihydroorotate dehydrogenase family protein; Catalyzes the conversion of dihydroorotate to orotate.
       0.789
Deba_2875
Protein of unknown function DUF152; COGs: COG1496 conserved hypothetical protein; InterPro IPR003730:IPR011324; KEGG: dol:Dole_2169 hypothetical protein; PFAM: protein of unknown function DUF152; SPTR: Q1NQ56 Putative uncharacterized protein; PFAM: Multi-copper polyphenol oxidoreductase laccase; TIGRFAM: conserved hypothetical protein TIGR00726.
       0.702
Deba_2876
Dihydroorotate dehydrogenase, electron transfer subunit, iron-sulfur cluster binding domain protein; COGs: COG0543 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductase; InterProIPR008333:IPR001433:IPR019480:IPR012165:IPR 017927:IPR017938; KEGG: dps:DP3016 dihydroorotate dehydrogenase, electron transfer subunit; PFAM: Dihydroorotate dehydrogenase, electron transfer subunit, iron-sulphur cluster binding domain; Oxidoreductase FAD-binding domain protein; oxidoreductase FAD/NAD(P)-binding domain protein; SPTR: Q1NN17 Oxidoreductase FAD/NAD(P)-binding:Oxidoreductase FAD-bind [...]
     
 0.695
Deba_0801
Thioesterase putative; InterPro IPR006683:IPR012660; KEGG: pmy:Pmen_0555 hypothetical protein; PFAM: Thioesterase putative; thioesterase superfamily protein; SPTR: A4XPQ9 Putative uncharacterized protein; PFAM: Thioesterase superfamily; TIGRFAM: uncharacterized domain 1; thioesterase domain, putative.
 
     0.606
Deba_0799
Catalase; COGs: COG0753 Catalase; InterProIPR011614:IPR020835:IPR018028:IPR010582:IPR 002226; KEGG: mbu:Mbur_0523 catalase; PFAM: Catalase related subgroup; Catalase domain protein; PRIAM: Catalase; SPTR: Q12YH1 Catalase; PFAM: Catalase; Catalase-related immune-responsive; Belongs to the catalase family.
   
   0.593
argJ
Arginine biosynthesis bifunctional protein ArgJ; Catalyzes two activities which are involved in the cyclic version of arginine biosynthesis: the synthesis of N-acetylglutamate from glutamate and acetyl-CoA as the acetyl donor, and of ornithine by transacetylation between N(2)-acetylornithine and glutamate. Belongs to the ArgJ family.
       0.592
Deba_1290
COGs: COG0642 Signal transduction histidine kinase; InterProIPR001789:IPR013767:IPR003018:IPR013656:IPR 003661:IPR003594:IPR008207:IPR005467:IPR000014:IPR000700:I PR004358:IPR001610:IPR011006:IPR009082; KEGG: dvm:DvMF_1096 multi-sensor hybrid histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; response regulator receiver; PAS fold domain protein; GAF domain protein; PAS fold-4 domain protein; Hpt domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; response regulator receiver; PAS domain con [...]
     
 0.532
guaA
GMP synthase, large subunit; Catalyzes the synthesis of GMP from XMP.
  
    0.503
Deba_2767
InterPro IPR000551:IPR009061; KEGG: det:DET1566 MerR family transcriptional regulator; PFAM: regulatory protein MerR; SMART: regulatory protein MerR; SPTR: Q3Z686 Transcriptional regulator, MerR family.
 
     0.472
Deba_2973
Transcriptional regulator, TetR family; COGs: COG1309 Transcriptional regulator; InterPro IPR001647:IPR012287:IPR009057:IPR011075; KEGG: dal:Dalk_1395 transcriptional regulator, TetR family; PFAM: regulatory protein TetR; SPTR: B8F9Z9 Transcriptional regulator, TetR family; PFAM: Bacterial regulatory proteins, tetR family.
  
     0.426
Your Current Organism:
Desulfarculus baarsii
NCBI taxonomy Id: 644282
Other names: D. baarsii DSM 2075, Desulfarculus baarsii 2st 14, Desulfarculus baarsii DSM 2075, Desulfarculus baarsii str. DSM 2075, Desulfarculus baarsii strain DSM 2075
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