STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Deba_2902Hypothetical protein; InterPro IPR000421:IPR008979; KEGG: sti:Sthe_1389 hypothetical protein; SPTR: D1C3K7 Putative uncharacterized protein. (945 aa)    
Predicted Functional Partners:
Deba_2903
COGs: COG0463 Glycosyltransferase involved in cell wall biogenesis; InterPro IPR001173; KEGG: cyc:PCC7424_2557 glycosyl transferase family 2; PFAM: glycosyl transferase family 2; SPTR: A0YU19 Glycosyltransferase involved in cell wall biogenesis-like protein; PFAM: Glycosyl transferase family 2.
  
  
 0.819
Deba_2901
Hypothetical protein; InterPro IPR000421:IPR008979; KEGG: saq:Sare_1697 hypothetical protein; SPTR: A8LWR4 Putative uncharacterized protein.
      
0.603
Deba_2162
COGs: COG0463 Glycosyltransferase involved in cell wall biogenesis; InterPro IPR001173; KEGG: sus:Acid_0658 NAD-dependent epimerase/dehydratase; PFAM: glycosyl transferase family 2; SPTR: Q02BA7 NAD-dependent epimerase/dehydratase; manually curated; PFAM: Glycosyl transferase family 2.
  
  
 0.477
fmt
methionyl-tRNA formyltransferase; Attaches a formyl group to the free amino group of methionyl- tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus; Belongs to the Fmt family.
  
  
 0.446
Deba_2768
COGs: COG0223 Methionyl-tRNA formyltransferase; InterPro IPR002376; KEGG: dal:Dalk_0631 formyl transferase domain protein; PFAM: formyl transferase domain protein; SPTR: B8FJQ8 Formyl transferase domain protein; PFAM: Formyl transferase.
  
  
 0.446
Deba_2900
KEGG: dma:DMR_04640 hypothetical protein; SPTR: C4XHZ3 Putative uncharacterized protein.
       0.401
Your Current Organism:
Desulfarculus baarsii
NCBI taxonomy Id: 644282
Other names: D. baarsii DSM 2075, Desulfarculus baarsii 2st 14, Desulfarculus baarsii DSM 2075, Desulfarculus baarsii str. DSM 2075, Desulfarculus baarsii strain DSM 2075
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