STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Deba_2904Conserved hypothetical protein; InterPro IPR018062:IPR005242; KEGG: amr:AM1_1029 hypothetical protein; SPTR: B5VUR7 Putative uncharacterized protein; PFAM: Uncharacterised protein family (UPF0104); TIGRFAM: conserved hypothetical protein. (318 aa)    
Predicted Functional Partners:
Deba_2905
KEGG: amr:AM1_1028 hypothetical protein; SPTR: A0YKG9 Putative uncharacterized protein.
 
     0.948
Deba_2903
COGs: COG0463 Glycosyltransferase involved in cell wall biogenesis; InterPro IPR001173; KEGG: cyc:PCC7424_2557 glycosyl transferase family 2; PFAM: glycosyl transferase family 2; SPTR: A0YU19 Glycosyltransferase involved in cell wall biogenesis-like protein; PFAM: Glycosyl transferase family 2.
 
  
 0.604
Deba_0214
KEGG: ter:Tery_1486 hypothetical protein; SPTR: Q115Q0 Putative uncharacterized protein; PFAM: Sulfotransferase family.
  
     0.472
Deba_0377
Endonuclease/exonuclease/phosphatase; COGs: COG3568 Metal-dependent hydrolase; InterPro IPR005135; KEGG: sru:SRU_2696 endonuclease/exonuclease/phosphatase family protein, putative; PFAM: Endonuclease/exonuclease/phosphatase; SPTR: B4WQH8 Endonuclease/exonuclease/phosphatase family; PFAM: Endonuclease/Exonuclease/phosphatase family.
  
  
 0.446
Deba_3048
KEGG: cyc:PCC7424_4025 hypothetical protein; SPTR: B7KL27 Putative uncharacterized protein.
  
     0.410
Your Current Organism:
Desulfarculus baarsii
NCBI taxonomy Id: 644282
Other names: D. baarsii DSM 2075, Desulfarculus baarsii 2st 14, Desulfarculus baarsii DSM 2075, Desulfarculus baarsii str. DSM 2075, Desulfarculus baarsii strain DSM 2075
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.