STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Deba_2906KEGG: dvm:DvMF_0342 hypothetical protein; SPTR: B8DPL2 Putative uncharacterized protein. (555 aa)    
Predicted Functional Partners:
Deba_3212
Tetratricopeptide TPR_2 repeat protein; InterPro IPR013026:IPR011990:IPR019734; KEGG: dsa:Desal_2816 tetratricopeptide TPR_2 repeat protein; SPTR: C0GTF0 Tetratricopeptide TPR_2 repeat protein.
  
     0.767
Deba_1299
KEGG: drt:Dret_1341 hypothetical protein; SPTR: C8X2I2 Putative uncharacterized protein; PFAM: Protein of unknown function (DUF1049).
  
     0.762
Deba_2348
KEGG: dde:Dde_0564 hypothetical protein; SPTR: Q315N1 Putative uncharacterized protein.
  
     0.760
Deba_0924
Putative phytochrome sensor protein; InterPro IPR003018; KEGG: sfu:Sfum_1918 hypothetical protein; PFAM: GAF domain protein; SMART: GAF domain protein; SPTR: A0LJK1 Putative uncharacterized protein; PFAM: GAF domain.
 
     0.738
Deba_1699
KEGG: sfu:Sfum_4024 hypothetical protein; SPTR: A0LQI8 Putative uncharacterized protein.
  
     0.735
Deba_2014
InterPro IPR009875; KEGG: dba:Dbac_0482 type IV pilus assembly PilZ; PFAM: type IV pilus assembly PilZ; SPTR: C0GRU4 Type IV pilus assembly PilZ; PFAM: PilZ domain.
  
     0.732
Deba_2749
Protein of unknown function DUF2143; InterPro IPR019222; KEGG: drt:Dret_1951 MJ0042 family finger-like protein; PFAM: Protein of unknown function DUF2143; SPTR: C0GMP0 MJ0042 family finger-like protein; PFAM: Yip1 domain.
  
     0.723
Deba_2349
COGs: COG4641 conserved hypothetical protein; KEGG: gsu:GSU3024 hypothetical protein; SPTR: Q748H8 Putative uncharacterized protein.
  
     0.720
Deba_1605
KEGG: dvu:DVU1136 host-nuclease inhibitor protein Gam, putative; SPTR: Q72CZ5 Host-nuclease inhibitor protein Gam, putative; PFAM: Bacteriophage Mu Gam like protein.
  
     0.704
Deba_2016
PBS lyase HEAT domain protein repeat-containing protein; COGs: COG1413 FOG: HEAT repeat; InterPro IPR004155:IPR016024:IPR011989; KEGG: dds:Ddes_1378 heat domain containing protein; PFAM: PBS lyase HEAT domain protein repeat-containing protein; SMART: PBS lyase HEAT domain protein repeat-containing protein; SPTR: B8J0K3 HEAT domain containing protein; PFAM: PBS lyase HEAT-like repeat; HEAT repeat.
  
     0.693
Your Current Organism:
Desulfarculus baarsii
NCBI taxonomy Id: 644282
Other names: D. baarsii DSM 2075, Desulfarculus baarsii 2st 14, Desulfarculus baarsii DSM 2075, Desulfarculus baarsii str. DSM 2075, Desulfarculus baarsii strain DSM 2075
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.