STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Deba_2908InterPro IPR018961; KEGG: sfu:Sfum_2138 hypothetical protein; PFAM: DnaJ homologue, subfamily C, member 28, conserved domain; SPTR: A0LK68 Putative uncharacterized protein; PFAM: Domain of unknown function (DUF1992). (131 aa)    
Predicted Functional Partners:
Deba_2909
KEGG: cag:Cagg_0661 alpha/beta hydrolase fold-containing protein; SPTR: B8G4W3 Alpha/beta hydrolase fold-containing protein.
 
     0.806
Deba_2767
InterPro IPR000551:IPR009061; KEGG: det:DET1566 MerR family transcriptional regulator; PFAM: regulatory protein MerR; SMART: regulatory protein MerR; SPTR: Q3Z686 Transcriptional regulator, MerR family.
 
  
 0.793
moaA
Molybdenum cofactor biosynthesis protein A; Catalyzes the cyclization of GTP to (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate.
       0.718
rnc
Ribonuclease III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism.
   
    0.620
Deba_2906
KEGG: dvm:DvMF_0342 hypothetical protein; SPTR: B8DPL2 Putative uncharacterized protein.
       0.567
Deba_1380
Phosphate acetyltransferase; Involved in acetate metabolism. In the N-terminal section; belongs to the CobB/CobQ family.
     
 0.461
Deba_1705
COGs: COG3173 aminoglycoside phosphotransferase; InterPro IPR011009:IPR002575:IPR008271; KEGG: dol:Dole_1459 aminoglycoside phosphotransferase; PFAM: aminoglycoside phosphotransferase; SPTR: A8ZZB0 Aminoglycoside phosphotransferase; PFAM: Phosphotransferase enzyme family.
   
 
 0.423
Deba_2870
YYY membrane protein; COGs: COG5427 Uncharacterized membrane protein; InterPro IPR018746; KEGG: cag:Cagg_2106 hypothetical protein; PFAM: YYY membrane protein; SPTR: B8GCE8 Putative uncharacterized protein; PFAM: Uncharacterized membrane protein (DUF2298); TIGRFAM: Chlor_Arch_YYY domain.
   
    0.416
Your Current Organism:
Desulfarculus baarsii
NCBI taxonomy Id: 644282
Other names: D. baarsii DSM 2075, Desulfarculus baarsii 2st 14, Desulfarculus baarsii DSM 2075, Desulfarculus baarsii str. DSM 2075, Desulfarculus baarsii strain DSM 2075
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