STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Deba_2956MT-A70 family protein; COGs: COG4725 Transcriptional activator adenine-specific DNA methyltransferase; InterPro IPR007757:IPR002052; KEGG: rde:RD1_1079 DNA methyltransferase; PFAM: MT-A70 family protein; SPTR: C8S3H4 MT-A70 family protein; PFAM: MT-A70; Belongs to the MT-A70-like family. (217 aa)    
Predicted Functional Partners:
Deba_2957
Restriction endonuclease BglII; InterPro IPR015278; KEGG: ajs:Ajs_0427 hypothetical protein; PFAM: Restriction endonuclease BglII; SPTR: C8R2M4 Restriction endonuclease BglII; PFAM: Restriction endonuclease BglII.
 
     0.922
Deba_1598
InterPro IPR006935:IPR018187; KEGG: dau:Daud_0199 type III restriction enzyme, res subunit; PFAM: type III restriction protein res subunit; SPTR: B1I0R5 Type III restriction enzyme, res subunit; manually curated; PFAM: Type III restriction enzyme, res subunit.
  
     0.532
Deba_1599
DNA methylase N-4/N-6 domain protein; COGs: COG2189 Adenine specific DNA methylase Mod; InterPro IPR002941:IPR002295:IPR002052:IPR005829; KEGG: sfu:Sfum_2856 DNA methylase N-4/N-6 domain-containing protein; PFAM: DNA methylase N-4/N-6 domain protein; SPTR: A0LM81 DNA methylase N-4/N-6 domain protein; PFAM: DNA methylase.
  
     0.519
rpoZ
DNA-directed RNA polymerase, omega subunit; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.
   
 
  0.517
rpoB
DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
  0.502
rpoA
DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 
 0.446
Deba_0107
Putative phage repressor; COGs: COG2932 transcriptional regulator protein; InterProIPR001387:IPR019759:IPR015927:IPR010982:IPR 011056; KEGG: csa:Csal_1365 putative phage repressor; PFAM: helix-turn-helix domain protein; Peptidase S24/S26A/S26B, conserved region; SMART: helix-turn-helix domain protein; SPTR: Q1QXT8 Putative phage repressor; PFAM: Helix-turn-helix; Peptidase S24-like.
  
    0.444
Deba_1312
Transcriptional regulator, XRE family; InterPro IPR001387:IPR015927:IPR010982; KEGG: dvm:DvMF_1678 putative phage repressor; SMART: helix-turn-helix domain protein; SPTR: B8DLY0 Putative phage repressor.
  
    0.444
Deba_1611
Putative phage repressor; InterProIPR001387:IPR015927:IPR010982:IPR019759:IPR 011056; KEGG: csa:Csal_1365 putative phage repressor; PFAM: helix-turn-helix domain protein; Peptidase S24/S26A/S26B, conserved region; SMART: helix-turn-helix domain protein; SPTR: Q1QXT8 Putative phage repressor; PFAM: Helix-turn-helix; Peptidase S24-like.
  
    0.421
Deba_2959
Protein of unknown function DUF933; COGs: COG0012 GTPase probable translation factor; InterPro IPR013029:IPR004396:IPR012675:IPR012676; KEGG: dol:Dole_0142 hypothetical protein; PFAM: Protein of unknown function DUF933; SPTR: A8ZSN9 Putative uncharacterized protein; PFAM: Protein of unknown function (DUF933); TIGRFAM: GTP-binding protein YchF.
     
 0.402
Your Current Organism:
Desulfarculus baarsii
NCBI taxonomy Id: 644282
Other names: D. baarsii DSM 2075, Desulfarculus baarsii 2st 14, Desulfarculus baarsii DSM 2075, Desulfarculus baarsii str. DSM 2075, Desulfarculus baarsii strain DSM 2075
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