STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Deba_3022methylated-DNA/protein- cysteinemethyltransferase; COGs: COG0350 Methylated DNA-protein cysteine methyltransferase; InterPro IPR014048:IPR011991; KEGG: sgr:SGR_1200 putative methylated-DNA--protein-cysteine S-methyltransferase; PFAM: Methylated-DNA-[protein]-cysteine S-methyltransferase DNA binding; SPTR: B1VV45 Putative methylated-DNA--protein-cysteine S-methyltransferase; TIGRFAM: methylated-DNA/protein-cysteine methyltransferase; PFAM: 6-O-methylguanine DNA methyltransferase, DNA binding domain; TIGRFAM: O-6-methylguanine DNA methyltransferase. (174 aa)    
Predicted Functional Partners:
Deba_3021
Radical SAM domain protein; COGs: COG1242 Fe-S oxidoreductase; InterPro IPR007197:IPR006638; KEGG: gsu:GSU0367 radical SAM family protein; PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; SPTR: Q74G80 Radical SAM protein, TIGR01212 family; PFAM: Radical SAM superfamily; TIGRFAM: radical SAM protein, TIGR01212 family.
       0.818
Deba_3020
Hypothetical protein; KEGG: GD20221 gene product from transcript GD20221-RA; SPTR: Q4AEI8 Fructan:fructan 1-fructosyltransferase.
     
 0.742
Deba_0134
UspA domain protein; InterPro IPR006016:IPR006015:IPR014729; KEGG: dma:DMR_39250 putative universal stress protein; PFAM: UspA domain protein; SPTR: C4XNB3 Putative universal stress protein; PFAM: Universal stress protein family.
  
  
 0.633
Deba_0198
UspA domain protein; COGs: COG0589 Universal stress protein UspA and related nucleotide-binding protein; InterPro IPR006016:IPR006015:IPR014729; KEGG: rxy:Rxyl_0169 hypothetical protein; PFAM: UspA domain protein; SPTR: C6NV99 UspA domain protein; PFAM: Universal stress protein family.
  
  
 0.633
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
   
 
 0.618
Deba_3019
InterPro IPR000551:IPR009061; KEGG: maq:Maqu_2054 MerR family transcriptional regulator; PFAM: regulatory protein MerR; SMART: regulatory protein MerR; SPTR: A1U2B6 Transcriptional regulator, MerR family; manually curated.
     
 0.556
Deba_0246
DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...]
   
 
 0.527
Deba_0055
UspA domain protein; InterPro IPR006016:IPR006015:IPR014729; KEGG: dol:Dole_1330 UspA domain-containing protein; PFAM: UspA domain protein; SPTR: A8ZYM9 UspA domain protein; PFAM: Universal stress protein family.
  
  
 0.522
Deba_0401
UspA domain protein; InterPro IPR006016:IPR014729:IPR006015; KEGG: dba:Dbac_2062 UspA domain protein; PFAM: UspA domain protein; SPTR: C7LNS3 UspA domain protein; PFAM: Universal stress protein family.
  
  
 0.522
Deba_0851
UspA domain protein; InterPro IPR014729:IPR006015:IPR006016; KEGG: dol:Dole_1866 UspA domain-containing protein; PFAM: UspA domain protein; SPTR: A8ZSD3 UspA domain protein; PFAM: Universal stress protein family.
  
  
 0.522
Your Current Organism:
Desulfarculus baarsii
NCBI taxonomy Id: 644282
Other names: D. baarsii DSM 2075, Desulfarculus baarsii 2st 14, Desulfarculus baarsii DSM 2075, Desulfarculus baarsii str. DSM 2075, Desulfarculus baarsii strain DSM 2075
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