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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Assay-based Predictions
experimentally determined
co-expression
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gene neighborhood
gene co-occurrence
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Deba_3049D-alanyl-D-alaninecarboxypeptidase/D-alanyl-D-al anine-endopeptidase; COGs: COG2027 D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 4); InterPro IPR000667:IPR012338; KEGG: mac:MA1969 serine-type D-Ala-D-Ala carboxypeptidase; PFAM: peptidase S13 D-Ala-D-Ala carboxypeptidase C; PRIAM: Serine-type D-Ala-D-Ala carboxypeptidase; SPTR: Q8TPE4 Serine-type D-Ala-D-Ala carboxypeptidase; TIGRFAM: D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase; PFAM: D-Ala-D-Ala carboxypeptidase 3 (S13) family; TIGRFAM: D-alanyl-D-alanine carboxypeptidase, serine-type, PBP4 family. (521 aa)    
Predicted Functional Partners:
Deba_1176
Penicillin-binding protein 1C; COGs: COG4953 Membrane carboxypeptidase/penicillin-binding protein PbpC; InterProIPR012338:IPR001264:IPR001460:IPR009647:IPR 011815; KEGG: ade:Adeh_2036 glycosyl transferase family penicillin-binding protein transpeptidase; PFAM: glycosyl transferase family 51; penicillin-binding protein transpeptidase; Penicillin-binding domain protein; PRIAM: Peptidoglycan glycosyltransferase; SPTR: Q2IJH6 Glycosyl transferase, family 51 / Penicillin-binding protein, transpeptidase; TIGRFAM: penicillin-binding protein 1C; PFAM: Penicillin-Binding Protein C-terminus Fami [...]
   
 
 0.915
Deba_2744
Penicillin-binding protein, 1A family; COGs: COG5009 Membrane carboxypeptidase/penicillin-binding protein; InterPro IPR001264:IPR001460:IPR012338:IPR011816; KEGG: dol:Dole_2534 1A family penicillin-binding protein; PFAM: glycosyl transferase family 51; penicillin-binding protein transpeptidase; PRIAM: Peptidoglycan glycosyltransferase; SPTR: A8ZWA4 Penicillin-binding protein, 1A family; TIGRFAM: penicillin-binding protein, 1A family; PFAM: Penicillin binding protein transpeptidase domain; Transglycosylase; TIGRFAM: penicillin-binding protein, 1A family.
     
 0.914
Deba_2787
Peptidoglycan glycosyltransferase; COGs: COG0768 Cell division protein FtsI/penicillin-binding protein 2; InterPro IPR005311:IPR001460:IPR005543:IPR012338; KEGG: gbm:Gbem_0485 penicillin-binding protein transpeptidase; PFAM: penicillin-binding protein transpeptidase; Penicillin-binding protein dimerisation domain; PASTA domain containing protein; PRIAM: Peptidoglycan glycosyltransferase; SPTR: B5EBP5 Penicillin-binding protein transpeptidase; PFAM: Penicillin binding protein transpeptidase domain; Penicillin-binding Protein dimerisation domain; PASTA domain.
     
 0.914
Deba_0280
Penicillin-binding protein 2; COGs: COG0768 Cell division protein FtsI/penicillin-binding protein 2; InterPro IPR005311:IPR001460:IPR012338:IPR017790; KEGG: geo:Geob_3477 penicillin-binding protein 2; PFAM: penicillin-binding protein transpeptidase; Penicillin-binding protein dimerisation domain; PRIAM: Peptidoglycan glycosyltransferase; SPTR: B9M5R1 Penicillin-binding protein 2; TIGRFAM: penicillin-binding protein 2; PFAM: Penicillin binding protein transpeptidase domain; Penicillin-binding Protein dimerisation domain; TIGRFAM: penicillin-binding protein 2.
     
 0.910
Deba_3288
COGs: COG0768 Cell division protein FtsI/penicillin-binding protein 2; InterPro IPR012338:IPR001460; KEGG: pca:Pcar_1370 FtsI-like cell division protein; PFAM: penicillin-binding protein transpeptidase; SPTR: Q3A4U0 FtsI-like cell division protein; PFAM: Penicillin binding protein transpeptidase domain.
     
 0.910
Deba_2969
KEGG: bcv:Bcav_3932 hypothetical protein; SPTR: C5C533 Putative uncharacterized protein.
   
 
 0.803
Deba_0768
Peptidase U61 LD-carboxypeptidase A; COGs: COG1619 conserved hypothetical protein; InterPro IPR003507; KEGG: ade:Adeh_3395 peptidase S66, LD-carboxypeptidase A; PFAM: peptidase U61 LD-carboxypeptidase A; SPTR: Q2IF02 Peptidase S66, LD-carboxypeptidase A; PFAM: LD-carboxypeptidase.
 
  
 0.767
Deba_1862
ErfK/YbiS/YcfS/YnhG family protein; COGs: COG3034 conserved hypothetical protein; InterPro IPR005490; KEGG: sat:SYN_02167 TPR repeat-containing protein; PFAM: ErfK/YbiS/YcfS/YnhG family protein; SPTR: Q2LTB1 Tetratricopeptide repeat family protein; PFAM: L,D-transpeptidase catalytic domain.
    
  0.539
Deba_1290
COGs: COG0642 Signal transduction histidine kinase; InterProIPR001789:IPR013767:IPR003018:IPR013656:IPR 003661:IPR003594:IPR008207:IPR005467:IPR000014:IPR000700:I PR004358:IPR001610:IPR011006:IPR009082; KEGG: dvm:DvMF_1096 multi-sensor hybrid histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; response regulator receiver; PAS fold domain protein; GAF domain protein; PAS fold-4 domain protein; Hpt domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; response regulator receiver; PAS domain con [...]
  
  
 0.537
Deba_3050
Transcriptional regulator, XRE family; InterPro IPR011051:IPR010982:IPR001387:IPR013096; KEGG: drt:Dret_1668 transcriptional regulator, XRE family; PFAM: Cupin 2 conserved barrel domain protein; helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; SPTR: C8X3F5 Transcriptional regulator, XRE family; PFAM: Cupin domain; Helix-turn-helix.
       0.499
Your Current Organism:
Desulfarculus baarsii
NCBI taxonomy Id: 644282
Other names: D. baarsii DSM 2075, Desulfarculus baarsii 2st 14, Desulfarculus baarsii DSM 2075, Desulfarculus baarsii str. DSM 2075, Desulfarculus baarsii strain DSM 2075
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