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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Deba_3068KEGG: gme:Gmet_3273 hypothetical protein; SPTR: Q39QI8 Putative uncharacterized protein. (121 aa)    
Predicted Functional Partners:
Deba_3067
KEGG: sfu:Sfum_0040 hypothetical protein; SPTR: A0LE91 Putative uncharacterized protein.
       0.791
pyrE
Phosphoribosyltransferase; Catalyzes the transfer of a ribosyl phosphate group from 5- phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP).
       0.789
Deba_3070
COGs: COG4866 conserved hypothetical protein; InterPro IPR016732; KEGG: wsu:WS0153 hypothetical protein; PFAM: Uncharacterised conserved protein UCP018688; SPTR: C9LT12 Putative uncharacterized protein; PFAM: Uncharacterized conserved protein (DUF2156).
       0.587
Deba_3066
Hypothetical protein; KEGG: sat:SYN_01306 putative cytoplasmic protein; SPTR: Q2LUN8 Hypothetical cytosolic protein.
       0.473
Your Current Organism:
Desulfarculus baarsii
NCBI taxonomy Id: 644282
Other names: D. baarsii DSM 2075, Desulfarculus baarsii 2st 14, Desulfarculus baarsii DSM 2075, Desulfarculus baarsii str. DSM 2075, Desulfarculus baarsii strain DSM 2075
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