STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Deba_3079COGs: COG0110 Acetyltransferase (isoleucine patch superfamily); InterPro IPR011004:IPR001451:IPR000253; KEGG: dvl:Dvul_2643 hexapaptide repeat-containing transferase; SPTR: A0YYK7 Putative uncharacterized protein. (255 aa)    
Predicted Functional Partners:
Deba_1031
COGs: COG0110 Acetyltransferase (isoleucine patch superfamily); InterPro IPR011004:IPR001451:IPR018357; KEGG: ade:Adeh_4281 acetyltransferase; SPTR: Q2IHI8 Acetyltransferase; PFAM: Bacterial transferase hexapeptide (three repeats).
 
     0.785
Deba_3234
COGs: COG0110 Acetyltransferase (isoleucine patch superfamily); InterPro IPR011004:IPR001451; KEGG: dma:DMR_34380 putative acetyltransferase; SPTR: C4XKI9 Putative acetyltransferase.
  
     0.757
Deba_0455
Undecaprenyl-phosphate glucose phosphotransferase; COGs: COG2148 Sugar transferase involved in lipopolysaccharide synthesis; InterPro IPR003362:IPR016040:IPR017473:IPR017475; KEGG: mxa:MXAN_2922 sugar transferase; PFAM: sugar transferase; PRIAM: Undecaprenyl-phosphate galactose phosphotransferase; SPTR: Q1PWC3 Similar to capsular polysaccharide synthesis protein; TIGRFAM: Undecaprenyl-phosphate glucose phosphotransferase; exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase; PFAM: Bacterial sugar transferase; TIGRFAM: Undecaprenyl-phosphate glucose phosphotransferase; e [...]
  
  
 0.710
Deba_3078
Methyltransferase type 11; COGs: COG2226 Methylase involved in ubiquinone/menaquinone biosynthesis; InterPro IPR013216; KEGG: pmh:P9215_04251 methylase involved in ubiquinone/menaquinone biosynthesis; PFAM: Methyltransferase type 11; SPTR: A8G360 Methylase involved in ubiquinone/menaquinone biosynthesis; PFAM: Methyltransferase domain.
 
     0.703
Deba_3080
COGs: COG0367 Asparagine synthase (glutamine-hydrolyzing); InterProIPR006426:IPR000583:IPR001962:IPR017932:IPR 014729; KEGG: rrs:RoseRS_4439 asparagine synthase (glutamine-hydrolyzing); PFAM: asparagine synthase; glutamine amidotransferase class-II; PRIAM: Asparagine synthase (glutamine-hydrolyzing); SPTR: A5V1L8 Asparagine synthase (Glutamine-hydrolyzing); TIGRFAM: asparagine synthase (glutamine-hydrolyzing); PFAM: Asparagine synthase; TIGRFAM: asparagine synthase (glutamine-hydrolyzing).
 
  
 0.659
Deba_0357
WxcM domain protein; COGs: COG0110 Acetyltransferase (isoleucine patch superfamily); InterProIPR001451:IPR008894:IPR011004:IPR011051:IPR 018357; KEGG: rfr:Rfer_0690 WxcM-like; PFAM: WxcM domain protein domain protein; transferase hexapeptide repeat containing protein; SPTR: C5T0P5 WxcM domain protein; PFAM: WxcM-like, C-terminal.
  
     0.635
Deba_3076
WD40 domain protein beta Propeller; InterPro IPR011659:IPR011042; KEGG: fsu:Fisuc_0369 WD40 domain protein beta propeller; PFAM: WD40 domain protein beta Propeller; SPTR: C9RKQ3 WD40 domain protein beta Propeller; PFAM: WD40-like Beta Propeller Repeat.
 
     0.616
Deba_3077
KEGG: afw:Anae109_4197 hypothetical protein; SPTR: A7HI29 Conserved hypothetical membrane protein; PFAM: Uncharacterised protein family (UPF0104).
       0.537
Deba_0617
NAD-dependent epimerase/dehydratase; COGs: COG0451 Nucleoside-diphosphate-sugar epimerase; InterPro IPR016040:IPR001509; KEGG: amr:AM1_2706 NAD-dependent epimerase/dehydratase, putative; PFAM: NAD-dependent epimerase/dehydratase; SPTR: B0C822 NAD-dependent epimerase/dehydratase, putative; PFAM: NAD dependent epimerase/dehydratase family.
 
  
 0.501
Deba_0973
KEGG: noc:Noc_2530 hypothetical protein; SPTR: B8KVG8 Sporulation and cell division repeat protein.
  
     0.487
Your Current Organism:
Desulfarculus baarsii
NCBI taxonomy Id: 644282
Other names: D. baarsii DSM 2075, Desulfarculus baarsii 2st 14, Desulfarculus baarsii DSM 2075, Desulfarculus baarsii str. DSM 2075, Desulfarculus baarsii strain DSM 2075
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