STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Deba_3095KEGG: cps:CPS_5021 hypothetical protein; SPTR: A6CBT1 Putative uncharacterized protein. (350 aa)    
Predicted Functional Partners:
Deba_3093
O-antigen polymerase; InterPro IPR007016; KEGG: hoh:Hoch_0024 O-antigen polymerase; PFAM: O-antigen polymerase; SPTR: C1ZFT0 O-Antigen Polymerase; PFAM: O-Antigen ligase.
 
     0.927
Deba_3096
Hypothetical protein; KEGG: phe:Phep_2408 heparinase II/III family protein; SPTR: B0NLH9 Putative uncharacterized protein.
 
     0.853
Deba_3094
AMP-dependent synthetase and ligase; COGs: COG1541 Coenzyme F390 synthetase; InterPro IPR000873; KEGG: scl:sce8601 CapK related-protein; PFAM: AMP-dependent synthetase and ligase; SPTR: A9FZN1 CapK related-protein; PFAM: AMP-binding enzyme.
 
     0.820
Deba_3091
Eight transmembrane protein EpsH; InterPro IPR013426:IPR019127; KEGG: dde:Dde_0847 hypothetical protein; PFAM: Exosortase EpsH-related; SPTR: Q314J8 Membrane protein, putative; TIGRFAM: eight transmembrane protein EpsH; PFAM: Transmembrane exosortase (Exosortase_EpsH); TIGRFAM: eight transmembrane protein EpsH (proposed exosortase).
 
     0.753
Deba_3089
Non-specific protein-tyrosine kinase; COGs: COG0489 ATPase involved in chromosome partitioning; KEGG: dat:HRM2_19680 putative exopolysaccharide biosynthesis protein (protein-tyrosine kinase); PRIAM: Non-specific protein-tyrosine kinase; SPTR: C0QCJ2 Putative exopolysaccharide biosynthesis protein (Protein-tyrosine kinase); TIGRFAM: capsular exopolysaccharide family.
 
     0.744
Deba_3092
EpsI family protein; InterPro IPR014263; KEGG: gme:Gmet_1503 hypothetical protein; SPTR: Q39VI7 Putative uncharacterized protein; TIGRFAM: EpsI family protein; PFAM: Protein of unknown function (DUF3485); TIGRFAM: EpsI family protein.
 
     0.737
Deba_3087
Lipopolysaccharide biosynthesis protein; COGs: COG3206 Uncharacterized protein involved in exopolysaccharide biosynthesis; InterPro IPR003856; KEGG: dat:HRM2_19670 GumC1; PFAM: lipopolysaccharide biosynthesis protein; SPTR: C0QCJ1 GumC1; PFAM: Chain length determinant protein; TIGRFAM: polysaccharide chain length determinant protein, PEP-CTERM locus subfamily.
 
     0.734
Deba_3090
Sugar transferase, PEP-CTERM system associated; COGs: COG2148 Sugar transferase involved in lipopolysaccharide synthesis; InterPro IPR017475:IPR017464:IPR003362; KEGG: dat:HRM2_19690 CpsE; PFAM: sugar transferase; SPTR: C0QCJ3 CpsE; TIGRFAM: sugar transferase, PEP-CTERM system associated; exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase; PFAM: Bacterial sugar transferase; TIGRFAM: sugar transferase, PEP-CTERM system associated; exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase.
       0.693
Deba_3088
AAA ATPase; COGs: COG3267 Type II secretory pathway component ExeA (predicted ATPase); InterPro IPR003593; KEGG: dal:Dalk_5147 peptidoglycan-binding domain 1 protein; SMART: AAA ATPase; SPTR: B8FE36 Peptidoglycan-binding domain 1 protein; PFAM: ATPase family associated with various cellular activities (AAA).
       0.677
Deba_3086
Hypothetical protein; KEGG: ach:Achl_2469 deoxyribodipyrimidine photo-lyase; SPTR: B8HBP6 Deoxyribodipyrimidine photo-lyase; PFAM: Uncharacterized protein conserved in bacteria (DUF2320).
       0.670
Your Current Organism:
Desulfarculus baarsii
NCBI taxonomy Id: 644282
Other names: D. baarsii DSM 2075, Desulfarculus baarsii 2st 14, Desulfarculus baarsii DSM 2075, Desulfarculus baarsii str. DSM 2075, Desulfarculus baarsii strain DSM 2075
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