STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Deba_3099COGs: COG0463 Glycosyltransferase involved in cell wall biogenesis; InterPro IPR001173; KEGG: cag:Cagg_2207 glycosyl transferase family 2; PFAM: glycosyl transferase family 2; SPTR: B8GD23 Glycosyl transferase family 2; PFAM: Glycosyl transferase family 2. (264 aa)    
Predicted Functional Partners:
Deba_2140
NAD-dependent epimerase/dehydratase; COGs: COG0451 Nucleoside-diphosphate-sugar epimerase; InterPro IPR016040:IPR008089:IPR002198:IPR001509; KEGG: sfu:Sfum_2190 NAD-dependent epimerase/dehydratase; PFAM: NAD-dependent epimerase/dehydratase; SPTR: C0GQ58 NAD-dependent epimerase/dehydratase; PFAM: NAD dependent epimerase/dehydratase family.
 
  
 0.661
Deba_0994
NAD-dependent epimerase/dehydratase; COGs: COG0451 Nucleoside-diphosphate-sugar epimerase; InterPro IPR016040:IPR001509; KEGG: dvm:DvMF_2922 NAD-dependent epimerase/dehydratase; PFAM: NAD-dependent epimerase/dehydratase; SPTR: B9BAZ3 UDP-glucose 4-epimerase; PFAM: NAD dependent epimerase/dehydratase family.
 
  
 0.635
Deba_0419
NAD-dependent epimerase/dehydratase; COGs: COG0451 Nucleoside-diphosphate-sugar epimerase; InterPro IPR001509:IPR016040; KEGG: nth:Nther_1582 NAD-dependent epimerase/dehydratase; PFAM: NAD-dependent epimerase/dehydratase; SPTR: B2A4I0 NAD-dependent epimerase/dehydratase; PFAM: NAD dependent epimerase/dehydratase family.
 
  
 0.633
Deba_0455
Undecaprenyl-phosphate glucose phosphotransferase; COGs: COG2148 Sugar transferase involved in lipopolysaccharide synthesis; InterPro IPR003362:IPR016040:IPR017473:IPR017475; KEGG: mxa:MXAN_2922 sugar transferase; PFAM: sugar transferase; PRIAM: Undecaprenyl-phosphate galactose phosphotransferase; SPTR: Q1PWC3 Similar to capsular polysaccharide synthesis protein; TIGRFAM: Undecaprenyl-phosphate glucose phosphotransferase; exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase; PFAM: Bacterial sugar transferase; TIGRFAM: Undecaprenyl-phosphate glucose phosphotransferase; e [...]
 
  
 0.596
Deba_3100
COGs: COG0438 Glycosyltransferase; KEGG: rmr:Rmar_0572 glycosyl transferase group 1; SPTR: C1ZFT8 Glycosyltransferase.
  
    0.568
Deba_2773
NAD-dependent epimerase/dehydratase; COGs: COG0451 Nucleoside-diphosphate-sugar epimerase; InterPro IPR001509:IPR016040:IPR008089; KEGG: rba:RB9168 nucleotide sugar epimerase; PFAM: NAD-dependent epimerase/dehydratase; SPTR: Q7ULZ7 Nucleotide sugar epimerase; PFAM: NAD dependent epimerase/dehydratase family.
 
  
 0.563
Deba_0146
NAD-dependent epimerase/dehydratase; COGs: COG0451 Nucleoside-diphosphate-sugar epimerase; InterPro IPR001509:IPR016040; KEGG: rmr:Rmar_1316 NAD-dependent epimerase/dehydratase; PFAM: NAD-dependent epimerase/dehydratase; SPTR: D0MI98 NAD-dependent epimerase/dehydratase; PFAM: NAD dependent epimerase/dehydratase family.
 
  
 0.514
Deba_3090
Sugar transferase, PEP-CTERM system associated; COGs: COG2148 Sugar transferase involved in lipopolysaccharide synthesis; InterPro IPR017475:IPR017464:IPR003362; KEGG: dat:HRM2_19690 CpsE; PFAM: sugar transferase; SPTR: C0QCJ3 CpsE; TIGRFAM: sugar transferase, PEP-CTERM system associated; exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase; PFAM: Bacterial sugar transferase; TIGRFAM: sugar transferase, PEP-CTERM system associated; exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase.
 
  
 0.504
Deba_1028
COGs: COG0463 Glycosyltransferase involved in cell wall biogenesis; InterPro IPR001173; KEGG: sye:Syncc9902_0083 glycosyltransferase; PFAM: glycosyl transferase family 2; SPTR: Q2BI18 Glycosyltransferase; PFAM: Glycosyl transferase family 2.
 
     0.503
Deba_3245
COGs: COG0463 Glycosyltransferase involved in cell wall biogenesis; InterPro IPR001173; KEGG: chy:CHY_1050 glycosyl transferase family protein; PFAM: glycosyl transferase family 2; SPTR: Q3AD88 Glycosyltransferase, group 2 family; PFAM: Glycosyl transferase family 2.
 
     0.499
Your Current Organism:
Desulfarculus baarsii
NCBI taxonomy Id: 644282
Other names: D. baarsii DSM 2075, Desulfarculus baarsii 2st 14, Desulfarculus baarsii DSM 2075, Desulfarculus baarsii str. DSM 2075, Desulfarculus baarsii strain DSM 2075
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