STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Deba_3115Cellulase; COGs: COG1363 Cellulase M and related protein; InterPro IPR008007; KEGG: smr:Smar_0057 peptidase M42 family protein; PFAM: peptidase M42 family protein; PRIAM: Cellulase; SPTR: A3DKL0 Peptidase M42 family protein; PFAM: M42 glutamyl aminopeptidase. (355 aa)    
Predicted Functional Partners:
Deba_3114
KEGG: mrd:Mrad2831_0725 hypothetical protein; SPTR: B1LXH0 Putative uncharacterized protein.
       0.723
Deba_3113
KEGG: sat:SYN_00080 putative cytoplasmic protein; SPTR: Q2LWI3 Hypothetical cytosolic protein.
       0.629
Deba_1211
Peptidase M24; COGs: COG0006 Xaa-Pro aminopeptidase; InterPro IPR001714:IPR000994:IPR000587; KEGG: sfu:Sfum_0169 peptidase M24; PFAM: peptidase M24; creatinase; SPTR: Q1NY97 Peptidase M24; PFAM: Metallopeptidase family M24; Creatinase/Prolidase N-terminal domain.
 
  
 0.444
Deba_3112
KEGG: bxe:Bxe_B0015 hypothetical protein; SPTR: Q13J30 Putative membrane protein.
       0.433
birA
biotin/acetyl-CoA-carboxylase ligase; Acts both as a biotin--[acetyl-CoA-carboxylase] ligase and a repressor; Belongs to the biotin--protein ligase family.
 
     0.429
rnc
Ribonuclease III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism.
  
  
 0.417
Your Current Organism:
Desulfarculus baarsii
NCBI taxonomy Id: 644282
Other names: D. baarsii DSM 2075, Desulfarculus baarsii 2st 14, Desulfarculus baarsii DSM 2075, Desulfarculus baarsii str. DSM 2075, Desulfarculus baarsii strain DSM 2075
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