Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Deba_3135Transcriptional regulator, TetR family; InterPro IPR009057:IPR001647:IPR012287; KEGG: dal:Dalk_3193 transcriptional regulator, TetR family; PFAM: regulatory protein TetR; SPTR: B8FGH4 Transcriptional regulator, TetR family; PFAM: Bacterial regulatory proteins, tetR family. (217 aa)    
Predicted Functional Partners:
Deba_3133
Short-chain dehydrogenase/reductase SDR; COGs: COG3425 3-hydroxy-3-methylglutaryl CoA synthase; InterProIPR016040:IPR016039:IPR016083:IPR013747:IPR 002878:IPR002198:IPR003033:IPR002347; KEGG: dol:Dole_1550 short-chain dehydrogenase/reductase SDR; PFAM: short-chain dehydrogenase/reductase SDR; protein of unknown function DUF35; 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III domain protein; Sterol-binding domain protein; SPTR: A8ZZV4 Short-chain dehydrogenase/reductase SDR; PFAM: Rubredoxin-like zinc ribbon domain (DUF35_N); 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C term [...]
 
   
 0.860
Deba_3134
Short-chain dehydrogenase/reductase SDR; COGs: COG1028 Dehydrogenase with different specificities (related to short-chain alcohol dehydrogenase); InterProIPR016040:IPR016083:IPR002539:IPR002198:IPR 003033:IPR002347; KEGG: dal:Dalk_3192 short-chain dehydrogenase/reductase SDR; PFAM: short-chain dehydrogenase/reductase SDR; MaoC domain protein dehydratase; Sterol-binding domain protein; SPTR: B8FGH3 Short-chain dehydrogenase/reductase SDR; PFAM: MaoC like domain; short chain dehydrogenase; SCP-2 sterol transfer family.
 
   
 0.825
Deba_3132
Propanoyl-CoA C-acyltransferase; COGs: COG0183 Acetyl-CoA acetyltransferase; InterPro IPR016039:IPR002155:IPR016038; KEGG: dal:Dalk_3190 acetyl-CoA acetyltransferase; PRIAM: Propanoyl-CoA C-acyltransferase; SPTR: B8FGH1 Propanoyl-CoA C-acyltransferase; PFAM: Thiolase, C-terminal domain; Thiolase, N-terminal domain; Belongs to the thiolase-like superfamily. Thiolase family.
 
  
 0.591
Deba_2489
InterPro IPR002539; KEGG: dal:Dalk_5057 MaoC domain protein dehydratase; PFAM: MaoC domain protein dehydratase; SPTR: B8FDU7 MaoC domain protein dehydratase; PFAM: MaoC like domain.
  
   
 0.565
Deba_0505
COGs: COG1960 Acyl-CoA dehydrogenase; InterProIPR006091:IPR006090:IPR009075:IPR009100:IPR 013764; KEGG: dal:Dalk_3085 acyl-CoA dehydrogenase domain protein; PFAM: acyl-CoA dehydrogenase domain protein; SPTR: B8FBM2 Acyl-CoA dehydrogenase domain protein; PFAM: Acyl-CoA dehydrogenase, C-terminal domain; Acyl-CoA dehydrogenase, middle domain.
  
     0.533
Deba_3136
Hypothetical protein; KEGG: gau:GAU_2232 MscS mechanosensitive ion channel family protein; SPTR: C9Y7D6 Putative uncharacterized protein.
       0.432
Deba_3137
KEGG: tro:trd_1427 hypothetical protein; SPTR: C1HC27 Predicted protein.
       0.432
Deba_3138
KEGG: tro:trd_1427 hypothetical protein; SPTR: B9L2M5 Putative membrane protein.
       0.432
Deba_3139
KEGG: hypothetical protein; SPTR: B9I5R4 Predicted protein.
       0.432
Deba_1105
Protein of unknown function DUF1291; COGs: COG3370 conserved hypothetical protein; InterPro IPR009710; KEGG: dal:Dalk_4103 protein of unknown function DUF1291; PFAM: protein of unknown function DUF1291; SPTR: B8FM55 Putative uncharacterized protein; PFAM: DsrE/DsrF-like family.
  
    0.430
Your Current Organism:
Desulfarculus baarsii
NCBI taxonomy Id: 644282
Other names: D. baarsii DSM 2075, Desulfarculus baarsii 2st 14, Desulfarculus baarsii DSM 2075, Desulfarculus baarsii str. DSM 2075, Desulfarculus baarsii strain DSM 2075
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