STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Deba_3139KEGG: hypothetical protein; SPTR: B9I5R4 Predicted protein. (109 aa)    
Predicted Functional Partners:
Deba_3136
Hypothetical protein; KEGG: gau:GAU_2232 MscS mechanosensitive ion channel family protein; SPTR: C9Y7D6 Putative uncharacterized protein.
      
0.773
Deba_3137
KEGG: tro:trd_1427 hypothetical protein; SPTR: C1HC27 Predicted protein.
      
0.773
Deba_3138
KEGG: tro:trd_1427 hypothetical protein; SPTR: B9L2M5 Putative membrane protein.
      
0.773
Deba_3140
KEGG: mch:Mchl_3791 hypothetical protein; SPTR: B1BVQ4 Putative uncharacterized protein.
       0.701
Deba_3141
PBS lyase HEAT domain protein repeat-containing protein; COGs: COG1413 FOG: HEAT repeat; InterProIPR016024:IPR004155:IPR000357:IPR011989:IPR 000225; KEGG: rrs:RoseRS_1736 heat repeat-containing PBS lyase; PFAM: PBS lyase HEAT domain protein repeat-containing protein; HEAT domain containing protein; SPTR: A5UU23 PBS lyase HEAT domain protein repeat-containing protein; PFAM: PBS lyase HEAT-like repeat; HEAT repeat; TIGRFAM: glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type.
       0.453
Deba_3135
Transcriptional regulator, TetR family; InterPro IPR009057:IPR001647:IPR012287; KEGG: dal:Dalk_3193 transcriptional regulator, TetR family; PFAM: regulatory protein TetR; SPTR: B8FGH4 Transcriptional regulator, TetR family; PFAM: Bacterial regulatory proteins, tetR family.
       0.432
Your Current Organism:
Desulfarculus baarsii
NCBI taxonomy Id: 644282
Other names: D. baarsii DSM 2075, Desulfarculus baarsii 2st 14, Desulfarculus baarsii DSM 2075, Desulfarculus baarsii str. DSM 2075, Desulfarculus baarsii strain DSM 2075
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