STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Deba_3141PBS lyase HEAT domain protein repeat-containing protein; COGs: COG1413 FOG: HEAT repeat; InterProIPR016024:IPR004155:IPR000357:IPR011989:IPR 000225; KEGG: rrs:RoseRS_1736 heat repeat-containing PBS lyase; PFAM: PBS lyase HEAT domain protein repeat-containing protein; HEAT domain containing protein; SPTR: A5UU23 PBS lyase HEAT domain protein repeat-containing protein; PFAM: PBS lyase HEAT-like repeat; HEAT repeat; TIGRFAM: glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type. (931 aa)    
Predicted Functional Partners:
efp
Translation elongation factor P; Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase.
  
 0.687
Deba_1290
COGs: COG0642 Signal transduction histidine kinase; InterProIPR001789:IPR013767:IPR003018:IPR013656:IPR 003661:IPR003594:IPR008207:IPR005467:IPR000014:IPR000700:I PR004358:IPR001610:IPR011006:IPR009082; KEGG: dvm:DvMF_1096 multi-sensor hybrid histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; response regulator receiver; PAS fold domain protein; GAF domain protein; PAS fold-4 domain protein; Hpt domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; response regulator receiver; PAS domain con [...]
 
   
 0.589
Deba_2899
Response regulator receiver protein; COGs: COG3063 Tfp pilus assembly protein PilF; InterProIPR001440:IPR013105:IPR001789:IPR019734:IPR 011990:IPR013026:IPR011006; KEGG: cyp:PCC8801_1300 TPR repeat-containing protein; PFAM: Tetratricopeptide TPR_2 repeat protein; TPR repeat-containing protein; SMART: response regulator receiver; Tetratricopeptide repeat; SPTR: Q4CAF1 TPR repeat:Sel1-like repeat:Sel1-like repeat; PFAM: Response regulator receiver domain; Tetratricopeptide repeat.
 
     0.498
Deba_3140
KEGG: mch:Mchl_3791 hypothetical protein; SPTR: B1BVQ4 Putative uncharacterized protein.
       0.493
Deba_1695
KEGG: ana:alr0841 hypothetical protein; SPTR: B4W3A2 Putative uncharacterized protein.
  
     0.490
guaA
GMP synthase, large subunit; Catalyzes the synthesis of GMP from XMP.
  
    0.480
Deba_3209
Sporulation domain protein; InterProIPR007730:IPR001440:IPR013105:IPR019734:IPR 013026:IPR011990:IPR004838; KEGG: bph:Bphy_0722 TPR repeat-containing protein; PFAM: Sporulation domain protein; Tetratricopeptide TPR_2 repeat protein; TPR repeat-containing protein; SPTR: B5WWJ9 TPR repeat-containing protein (Fragment); PFAM: Sporulation related domain.
 
     0.458
Deba_3136
Hypothetical protein; KEGG: gau:GAU_2232 MscS mechanosensitive ion channel family protein; SPTR: C9Y7D6 Putative uncharacterized protein.
       0.453
Deba_3137
KEGG: tro:trd_1427 hypothetical protein; SPTR: C1HC27 Predicted protein.
       0.453
Deba_3138
KEGG: tro:trd_1427 hypothetical protein; SPTR: B9L2M5 Putative membrane protein.
       0.453
Your Current Organism:
Desulfarculus baarsii
NCBI taxonomy Id: 644282
Other names: D. baarsii DSM 2075, Desulfarculus baarsii 2st 14, Desulfarculus baarsii DSM 2075, Desulfarculus baarsii str. DSM 2075, Desulfarculus baarsii strain DSM 2075
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