STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Deba_3146Extracellular ligand-binding receptor; COGs: COG0683 ABC-type branched-chain amino acid transport systems periplasmic component; InterPro IPR001828; KEGG: tna:CTN_1435 branched chain amino acid ABC transporter, periplasmic amino acid-binding protein; PFAM: Extracellular ligand-binding receptor; SPTR: B9K9H8 Branched chain amino acid ABC transporter, periplasmic amino acid-binding protein; PFAM: Receptor family ligand binding region. (399 aa)    
Predicted Functional Partners:
Deba_3144
Inner-membrane translocator; COGs: COG4177 ABC-type branched-chain amino acid transport system permease component; InterPro IPR001851; KEGG: sfu:Sfum_0858 inner-membrane translocator; PFAM: inner-membrane translocator; SPTR: A0LGK3 Inner-membrane translocator; PFAM: Branched-chain amino acid transport system / permease component.
 
  
 0.972
Deba_3145
Inner-membrane translocator; COGs: COG0559 Branched-chain amino acid ABC-type transport system permease components; InterPro IPR001851; KEGG: sfu:Sfum_0861 inner-membrane translocator; PFAM: inner-membrane translocator; SPTR: A0LGK6 Inner-membrane translocator; PFAM: Branched-chain amino acid transport system / permease component.
 
  
 0.969
Deba_3143
ABC transporter related protein; COGs: COG0411 ABC-type branched-chain amino acid transport systems ATPase component; InterPro IPR003439:IPR003593:IPR017871; KEGG: dds:Ddes_0475 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase; SPTR: B8J4C9 ABC transporter related; PFAM: ABC transporter; Branched-chain amino acid ATP-binding cassette transporter.
 
  
 0.965
Deba_3142
ABC transporter related protein; COGs: COG0410 ABC-type branched-chain amino acid transport systems ATPase component; InterPro IPR003439:IPR003593:IPR017871; KEGG: lhk:LHK_01911 LivF; PFAM: ABC transporter related; SMART: AAA ATPase; SPTR: C1D8V5 LivF; PFAM: ABC transporter.
 
  
 0.959
Deba_2365
Extracellular ligand-binding receptor; COGs: COG0683 ABC-type branched-chain amino acid transport systems periplasmic component; InterPro IPR001828; KEGG: dal:Dalk_3502 extracellular ligand-binding receptor; PFAM: Extracellular ligand-binding receptor; SPTR: B8FBY5 Extracellular ligand-binding receptor; PFAM: Receptor family ligand binding region.
  
  
  0.936
Deba_2060
Extracellular ligand-binding receptor; COGs: COG0683 ABC-type branched-chain amino acid transport systems periplasmic component; InterPro IPR001828; KEGG: tye:THEYE_A0768 leu/ile/val-binding protein; PFAM: Extracellular ligand-binding receptor; SPTR: Q649G6 Putative uncharacterized protein; PFAM: Receptor family ligand binding region.
  
  
  0.935
Deba_0639
Extracellular ligand-binding receptor; COGs: COG0683 ABC-type branched-chain amino acid transport systems periplasmic component; InterPro IPR000709:IPR001828; KEGG: geo:Geob_3442 extracellular ligand-binding receptor; PFAM: Extracellular ligand-binding receptor; SPTR: B9M5M6 Extracellular ligand-binding receptor; PFAM: Receptor family ligand binding region.
  
  
 
0.929
Deba_0640
Extracellular ligand-binding receptor; COGs: COG0683 ABC-type branched-chain amino acid transport systems periplasmic component; InterPro IPR001828; KEGG: app:CAP2UW1_2211 extracellular ligand-binding receptor; PFAM: Extracellular ligand-binding receptor; SPTR: C7RP21 Extracellular ligand-binding receptor; PFAM: Receptor family ligand binding region.
  
  
 
0.929
Deba_1303
Extracellular ligand-binding receptor; COGs: COG0683 ABC-type branched-chain amino acid transport systems periplasmic component; InterPro IPR001828; KEGG: dvl:Dvul_0562 extracellular ligand-binding receptor; PFAM: Extracellular ligand-binding receptor; SPTR: Q727W0 High-affinity branched-chain amino acid ABC transporter, perisplasmic amino acid binding protein; PFAM: Receptor family ligand binding region.
  
  
 
0.925
Deba_0173
Extracellular ligand-binding receptor; COGs: COG0683 ABC-type branched-chain amino acid transport systems periplasmic component; InterPro IPR001828; KEGG: sfu:Sfum_3400 extracellular ligand-binding receptor; PFAM: Extracellular ligand-binding receptor; SPTR: A0LNS1 Extracellular ligand-binding receptor; PFAM: Receptor family ligand binding region.
  
  
 
0.923
Your Current Organism:
Desulfarculus baarsii
NCBI taxonomy Id: 644282
Other names: D. baarsii DSM 2075, Desulfarculus baarsii 2st 14, Desulfarculus baarsii DSM 2075, Desulfarculus baarsii str. DSM 2075, Desulfarculus baarsii strain DSM 2075
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