STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Deba_3153KEGG: dol:Dole_0758 hypothetical protein; SPTR: A8ZVA7 Putative uncharacterized protein. (150 aa)    
Predicted Functional Partners:
Deba_3154
Methyltransferase type 12; InterPro IPR013217; KEGG: gsu:GSU1214 tetracenomycin polyketide synthesis 8-O-methyltransferase, putative; PFAM: Methyltransferase type 12; SPTR: Q74DV1 Tetracenomycin polyketide synthesis 8-o-methyltransferase, putative; PFAM: O-methyltransferase.
       0.742
Deba_3028
KEGG: dat:HRM2_34640 hypothetical protein; SPTR: C0Q934 Putative uncharacterized protein.
  
     0.570
Deba_2971
InterPro IPR001450:IPR017896:IPR017900; KEGG: dol:Dole_2064 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein; PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; SPTR: A8ZTT5 4Fe-4S ferredoxin iron-sulfur binding domain protein; PFAM: 4Fe-4S binding domain.
  
     0.557
Deba_0225
KEGG: dol:Dole_2869 hypothetical protein; SPTR: A8ZYE7 Putative uncharacterized protein.
  
     0.532
Deba_0869
InterPro IPR017896:IPR001450:IPR017900; KEGG: dat:HRM2_45120 iron-sulfur cluster binding protein; PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; SPTR: C0QF67 Iron-sulfur cluster binding protein; PFAM: 4Fe-4S binding domain.
  
     0.510
Deba_0582
Rubrerythrin; InterPro IPR003251:IPR009078:IPR012347; KEGG: dal:Dalk_3005 rubrerythrin; PFAM: Rubrerythrin; SPTR: B8FL60 Rubrerythrin; PFAM: Rubrerythrin.
  
     0.487
Deba_0645
KEGG: dol:Dole_2002 tripartite ATP-independent periplasmic transporter DctQ; SPTR: A8ZTC3 Tripartite ATP-independent periplasmic transporter DctQ component; PFAM: Tripartite ATP-independent periplasmic transporters, DctQ component.
  
    0.486
Deba_2530
KEGG: rfr:Rfer_2515 hypothetical protein; SPTR: Q21VH1 Putative uncharacterized protein.
  
     0.464
Deba_2232
4Fe-4S ferredoxin iron-sulfur binding domain protein; COGs: COG1149 MinD superfamily P-loop ATPase containing an inserted ferredoxin domain; InterPro IPR017896:IPR017900:IPR001450; KEGG: dal:Dalk_0385 4Fe-4S ferredoxin iron-sulfur binding domain protein; PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; SPTR: B8FH06 4Fe-4S ferredoxin iron-sulfur binding domain protein; PFAM: 4Fe-4S binding domain.
  
     0.453
Deba_0395
Nucleotide sugar dehydrogenase; COGs: COG0677 UDP-N-acetyl-D-mannosaminuronate dehydrogenase; InterProIPR001732:IPR014026:IPR014027:IPR008927:IPR 016040:IPR017476; KEGG: dal:Dalk_1698 nucleotide sugar dehydrogenase; PFAM: UDP-glucose/GDP-mannose dehydrogenase dimerisation; UDP-glucose/GDP-mannose dehydrogenase; UDP-glucose/GDP-mannose dehydrogenase; SPTR: B8FEJ1 Nucleotide sugar dehydrogenase; TIGRFAM: nucleotide sugar dehydrogenase; PFAM: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; UDP-glucose/GDP-mannose dehydrogenase family, central domain; UDP-glucose/GDP-mann [...]
  
    0.444
Your Current Organism:
Desulfarculus baarsii
NCBI taxonomy Id: 644282
Other names: D. baarsii DSM 2075, Desulfarculus baarsii 2st 14, Desulfarculus baarsii DSM 2075, Desulfarculus baarsii str. DSM 2075, Desulfarculus baarsii strain DSM 2075
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