STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Deba_3259COGs: COG1960 Acyl-CoA dehydrogenase; InterProIPR009100:IPR009075:IPR006092:IPR006091:IPR 006090:IPR013786:IPR013764:IPR006089; KEGG: sfu:Sfum_1260 acyl-CoA dehydrogenase domain-containing protein; PFAM: acyl-CoA dehydrogenase domain protein; SPTR: A0LHQ0 Isovaleryl-CoA dehydrogenase; PFAM: Acyl-CoA dehydrogenase, C-terminal domain; Acyl-CoA dehydrogenase, middle domain; Acyl-CoA dehydrogenase, N-terminal domain. (389 aa)    
Predicted Functional Partners:
Deba_0032
COGs: COG1024 Enoyl-CoA hydratase/carnithine racemase; InterProIPR001753:IPR006176:IPR008927:IPR016040:IPR 013328; KEGG: hoh:Hoch_3456 3-hydroxyacyl-CoA dehydrogenase NAD-binding protein; PFAM: Enoyl-CoA hydratase/isomerase; 3-hydroxyacyl-CoA dehydrogenase NAD-binding; SPTR: D0LW26 3-hydroxyacyl-CoA dehydrogenase NAD-binding protein; PFAM: Enoyl-CoA hydratase/isomerase family.
  
 0.979
Deba_0086
COGs: COG1250 3-hydroxyacyl-CoA dehydrogenase; InterProIPR001753:IPR006176:IPR006108:IPR016040:IPR 008927:IPR018376:IPR013328; KEGG: 3-hydroxyacyl-CoA dehyrogenase, putative; PFAM: 3-hydroxyacyl-CoA dehydrogenase NAD-binding; Enoyl-CoA hydratase/isomerase; 3-hydroxyacyl-CoA dehydrogenase domain protein; SPTR: B9RKN5 3-hydroxyacyl-CoA dehyrogenase, putative; PFAM: Enoyl-CoA hydratase/isomerase family; 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain; 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; Belongs to the enoyl-CoA hydratase/isomerase family.
  
 0.979
Deba_3253
COGs: COG4799 Acetyl-CoA carboxylase carboxyltransferase component (subunits alpha and beta); InterPro IPR000022:IPR011762:IPR011763; KEGG: dol:Dole_2180 propionyl-CoA carboxylase; PFAM: carboxyl transferase; PRIAM: Methylcrotonoyl-CoA carboxylase; SPTR: A8ZUF2 Propionyl-CoA carboxylase; PFAM: Carboxyl transferase domain.
 
 
 0.976
Deba_0530
COGs: COG1024 Enoyl-CoA hydratase/carnithine racemase; InterPro IPR001753; KEGG: similar to peroxisomal enoyl-coenzyme A hydratase-like protein; PFAM: Enoyl-CoA hydratase/isomerase; SPTR: C9Y8M4 Delta(3,5)-Delta(2,4)-dienoyl-CoA isomerase, mitochondrial; PFAM: Enoyl-CoA hydratase/isomerase family.
  
 0.951
Deba_1036
COGs: COG1024 Enoyl-CoA hydratase/carnithine racemase; InterPro IPR001753; KEGG: amc:MADE_02638 enoyl-CoA hydratase/carnithine racemase; PFAM: Enoyl-CoA hydratase/isomerase; SPTR: B4RTC8 Enoyl-CoA hydratase/carnithine racemase; PFAM: Enoyl-CoA hydratase/isomerase family.
  
 0.951
Deba_1863
COGs: COG1250 3-hydroxyacyl-CoA dehydrogenase; InterProIPR017441:IPR006176:IPR006108:IPR001753:IPR 016040:IPR008927:IPR013328; KEGG: chy:CHY_1609 3-hydroxyacyl-CoA dehydrogenase/enoyl-CoA hydratase/isomerase family protein; PFAM: 3-hydroxyacyl-CoA dehydrogenase NAD-binding; 3-hydroxyacyl-CoA dehydrogenase domain protein; Enoyl-CoA hydratase/isomerase; SPTR: Q3ABP7 3-hydroxyacyl-CoA dehydrogenase/enoyl-CoA hydratase/isomerase family protein; PFAM: Enoyl-CoA hydratase/isomerase family; 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain; 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain.
  
 0.807
Deba_3257
COGs: COG1024 Enoyl-CoA hydratase/carnithine racemase; InterPro IPR001753; KEGG: dal:Dalk_2073 enoyl-CoA hydratase/isomerase; PFAM: Enoyl-CoA hydratase/isomerase; SPTR: B8FG88 Enoyl-CoA hydratase/isomerase; PFAM: Enoyl-CoA hydratase/isomerase family.
  
 0.802
Deba_2389
COGs: COG2025 Electron transfer flavoprotein alpha subunit; InterProIPR014729:IPR017896:IPR017900:IPR001450:IPR 014730:IPR014731; KEGG: sfu:Sfum_1373 electron transfer flavoprotein, alpha subunit; PFAM: Electron transfer flavoprotein alpha/beta-subunit; 4Fe-4S ferredoxin iron-sulfur binding domain protein; Electron transfer flavoprotein alpha subunit; SPTR: C8QXY2 Electron transfer flavoprotein alpha/beta-subunit; PFAM: 4Fe-4S binding domain; Electron transfer flavoprotein domain; Electron transfer flavoprotein FAD-binding domain.
 
 0.758
Deba_2884
COGs: COG2025 Electron transfer flavoprotein alpha subunit; InterProIPR014730:IPR014731:IPR001308:IPR014729:IPR 018206; KEGG: sat:SYN_02637 electron transfer flavoprotein alpha-subunit; PFAM: Electron transfer flavoprotein alpha/beta-subunit; Electron transfer flavoprotein alpha subunit; SPTR: Q2LWR0 Electron transfer flavoprotein alpha-subunit; PFAM: Electron transfer flavoprotein domain; Electron transfer flavoprotein FAD-binding domain.
 
 0.746
Deba_1700
COGs: COG2025 Electron transfer flavoprotein alpha subunit; InterPro IPR014730:IPR014731:IPR001308:IPR014729; KEGG: dal:Dalk_4506 electron transfer flavoprotein alpha subunit; PFAM: Electron transfer flavoprotein alpha subunit; Electron transfer flavoprotein alpha/beta-subunit; SPTR: B8FCM2 Electron transfer flavoprotein alpha subunit; PFAM: Electron transfer flavoprotein domain; Electron transfer flavoprotein FAD-binding domain.
 
 0.743
Your Current Organism:
Desulfarculus baarsii
NCBI taxonomy Id: 644282
Other names: D. baarsii DSM 2075, Desulfarculus baarsii 2st 14, Desulfarculus baarsii DSM 2075, Desulfarculus baarsii str. DSM 2075, Desulfarculus baarsii strain DSM 2075
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