STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Deba_3265Hypothetical protein; KEGG: afo:Afer_1450 FAD-dependent pyridine nucleotide-disulphide oxidoreductase; SPTR: Q3J0I5 Sigma-54, RpoN. (184 aa)    
Predicted Functional Partners:
Deba_3266
KEGG: sde:Sde_1498 hypothetical protein; SPTR: A7LUH4 Putative uncharacterized protein.
       0.773
Deba_3264
Tetratricopeptide TPR_2 repeat protein; InterPro IPR013105:IPR019734:IPR013026:IPR011990; KEGG: ttu:TERTU_4325 tetratricopeptide repeat domain protein; PFAM: Tetratricopeptide TPR_2 repeat protein; SPTR: C5BIE3 Tetratricopeptide repeat domain protein.
       0.757
Deba_3267
PP-loop domain protein; COGs: COG0037 ATPase of the PP-loop superfamily protein implicated in cell cycle control; InterPro IPR011063:IPR012089:IPR014729; KEGG: sfu:Sfum_0716 PP-loop domain-containing protein; PFAM: PP-loop domain protein; SPTR: C6I155 Probable ATPase, PP-loop superfamily protein; PFAM: PP-loop family; Belongs to the TtcA family.
       0.718
cysS-2
Cysteine synthase; COGs: COG0215 Cysteinyl-tRNA synthetase; InterProIPR005856:IPR002308:IPR001926:IPR009080:IPR 015803:IPR015273:IPR014729:IPR001216; KEGG: dal:Dalk_3820 cysteine synthase; PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit; Cysteinyl-tRNA synthetase class Ia; Cysteinyl-tRNA synthetase class Ia DALR; SPTR: B8FC88 Cysteine synthase; TIGRFAM: cysteine synthase; cysteinyl-tRNA synthetase; PFAM: tRNA synthetases class I (C) catalytic domain; DALR domain; Pyridoxal-phosphate dependent enzyme; TIGRFAM: glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Str [...]
       0.529
Deba_3268
Pentapeptide repeat protein; COGs: COG1357 Uncharacterized low-complexity protein; InterPro IPR001646; KEGG: scl:sce0105 hypothetical protein; PFAM: pentapeptide repeat protein; SPTR: A9GLE4 Putative uncharacterized protein; PFAM: Pentapeptide repeats (8 copies).
       0.506
Your Current Organism:
Desulfarculus baarsii
NCBI taxonomy Id: 644282
Other names: D. baarsii DSM 2075, Desulfarculus baarsii 2st 14, Desulfarculus baarsii DSM 2075, Desulfarculus baarsii str. DSM 2075, Desulfarculus baarsii strain DSM 2075
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