STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Deba_3275Mor transcription activator domain protein; InterPro IPR009057:IPR014875; KEGG: amt:Amet_4373 hypothetical protein; PFAM: Mor transcription activator domain protein; SPTR: C6IXL2 Predicted protein; PFAM: Mor transcription activator family. (102 aa)    
Predicted Functional Partners:
Deba_0448
KEGG: dae:Dtox_1266 protein of unknown function UPF0153; SPTR: C8W5G6 Putative uncharacterized protein; manually curated.
  
     0.641
Deba_3280
Phage uncharacterized protein; InterPro IPR006517; KEGG: gem:GM21_3672 hypothetical protein; SPTR: C6E6R5 Putative uncharacterized protein; TIGRFAM: phage uncharacterized protein; PFAM: Terminase-like family; TIGRFAM: phage uncharacterized protein (putative large terminase), C-terminal domain.
 
     0.587
Deba_3274
KEGG: acp:A2cp1_3965 DNA repair protein RadC; SPTR: B8J8K0 DNA repair protein RadC.
       0.533
Deba_3276
KEGG: ank:AnaeK_3859 hypothetical protein; SPTR: B4UEV3 Putative uncharacterized protein.
       0.460
Deba_3277
KEGG: hypothetical protein; SPTR: C3Z5T8 Putative uncharacterized protein.
       0.460
Deba_3278
KEGG: hypothetical protein; SPTR: C3XWY5 Putative uncharacterized protein (Fragment).
       0.460
Deba_3279
KEGG: xce:Xcel_3312 catalase/peroxidase HPI; SPTR: A4HLU0 Putative uncharacterized protein; PFAM: Phage terminase small subunit.
       0.460
Deba_3281
Phage portal protein, HK97 family; COGs: COG4695 Phage-related protein; InterPro IPR006427:IPR006944; KEGG: emi:Emin_0697 HK97 family phage portal protein; PFAM: portal protein; SPTR: B2KCK6 Phage portal protein, HK97 family; TIGRFAM: phage portal protein, HK97 family; PFAM: Phage portal protein; TIGRFAM: phage portal protein, HK97 family.
       0.460
Deba_3282
InterPro IPR006433; KEGG: gdj:Gdia_0566 peptidase U35 phage prohead HK97; PFAM: peptidase U35 phage prohead HK97; SPTR: B9XDE6 Putative uncharacterized protein; PFAM: Caudovirus prohead protease; TIGRFAM: phage prohead protease, HK97 family.
       0.460
Deba_3283
COGs: COG4653 phage phi-C31 gp36 major capsid-like protein; InterPro IPR006444; KEGG: emi:Emin_1086 HK97 family phage major capsid protein; PFAM: major capsid protein HK97; SPTR: B2KDP2 Phage major capsid protein, HK97 family; PFAM: Phage capsid family; TIGRFAM: phage major capsid protein, HK97 family.
       0.408
Your Current Organism:
Desulfarculus baarsii
NCBI taxonomy Id: 644282
Other names: D. baarsii DSM 2075, Desulfarculus baarsii 2st 14, Desulfarculus baarsii DSM 2075, Desulfarculus baarsii str. DSM 2075, Desulfarculus baarsii strain DSM 2075
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.