STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Deba_3283COGs: COG4653 phage phi-C31 gp36 major capsid-like protein; InterPro IPR006444; KEGG: emi:Emin_1086 HK97 family phage major capsid protein; PFAM: major capsid protein HK97; SPTR: B2KDP2 Phage major capsid protein, HK97 family; PFAM: Phage capsid family; TIGRFAM: phage major capsid protein, HK97 family. (403 aa)    
Predicted Functional Partners:
Deba_3281
Phage portal protein, HK97 family; COGs: COG4695 Phage-related protein; InterPro IPR006427:IPR006944; KEGG: emi:Emin_0697 HK97 family phage portal protein; PFAM: portal protein; SPTR: B2KCK6 Phage portal protein, HK97 family; TIGRFAM: phage portal protein, HK97 family; PFAM: Phage portal protein; TIGRFAM: phage portal protein, HK97 family.
 
 
 
 0.951
Deba_2237
Phage portal protein, HK97 family; COGs: COG4695 Phage-related protein; InterPro IPR006944:IPR006427; KEGG: hmo:HM1_2882 phage portal protein, hk97 family; PFAM: portal protein; SPTR: B0N9U4 Putative uncharacterized protein; TIGRFAM: phage portal protein, HK97 family; PFAM: Phage portal protein; TIGRFAM: phage portal protein, HK97 family.
 
 
 
 0.859
Deba_2549
Phage portal protein, HK97 family; COGs: COG4695 Phage-related protein; InterPro IPR006427:IPR006944; KEGG: dvl:Dvul_0869 HK97 family phage portal protein; PFAM: portal protein; SPTR: A1VBS4 Phage portal protein, HK97 family; TIGRFAM: phage portal protein, HK97 family; PFAM: Phage portal protein; TIGRFAM: phage portal protein, HK97 family.
 
 
 
 0.859
Deba_2587
Phage portal protein, HK97 family; COGs: COG4695 Phage-related protein; InterPro IPR006427:IPR006944; KEGG: dvu:DVU1502 HK97 family portal protein; PFAM: portal protein; SPTR: Q72BY2 Portal protein, HK97 family; TIGRFAM: phage portal protein, HK97 family; PFAM: Phage portal protein; TIGRFAM: phage portal protein, HK97 family.
 
 
 
 0.859
Deba_2238
InterPro IPR006433:IPR006444; KEGG: cth:Cthe_2866 phage major capsid protein, HK97; PFAM: peptidase U35 phage prohead HK97; major capsid protein HK97; SPTR: B4BHH3 Major capsid protein HK97; TIGRFAM: phage major capsid protein, HK97 family; PFAM: Phage capsid family; Caudovirus prohead protease; TIGRFAM: phage major capsid protein, HK97 family; phage prohead protease, HK97 family.
 
  
 0.838
Deba_2582
InterPro IPR011738; KEGG: dvl:Dvul_0866 hypothetical protein; SPTR: A1VBS1 Putative uncharacterized protein; TIGRFAM: phage conserved hypothetical protein, phiE125 gp8 family.
 
 
 0.828
Deba_3282
InterPro IPR006433; KEGG: gdj:Gdia_0566 peptidase U35 phage prohead HK97; PFAM: peptidase U35 phage prohead HK97; SPTR: B9XDE6 Putative uncharacterized protein; PFAM: Caudovirus prohead protease; TIGRFAM: phage prohead protease, HK97 family.
 
  
 0.810
Deba_2594
HNH endonuclease; InterPro IPR003615:IPR002711; KEGG: dvl:Dvul_0873 HNH endonuclease; PFAM: HNH endonuclease; SMART: HNH nuclease; SPTR: A1VBS8 HNH endonuclease; PFAM: HNH endonuclease.
 
   
 0.790
Deba_2557
HNH endonuclease; InterPro IPR003615:IPR002711; KEGG: dvl:Dvul_0873 HNH endonuclease; PFAM: HNH endonuclease; SMART: HNH nuclease; SPTR: A1VBS8 HNH endonuclease; manually curated; PFAM: HNH endonuclease.
 
   
 0.789
Deba_1721
HNH endonuclease; InterPro IPR003615:IPR002711; KEGG: dvu:DVU1505 holin, putative; PFAM: HNH endonuclease; SMART: HNH nuclease; SPTR: Q72BX9 Holin, putative; manually curated; PFAM: HNH endonuclease.
 
   
 0.787
Your Current Organism:
Desulfarculus baarsii
NCBI taxonomy Id: 644282
Other names: D. baarsii DSM 2075, Desulfarculus baarsii 2st 14, Desulfarculus baarsii DSM 2075, Desulfarculus baarsii str. DSM 2075, Desulfarculus baarsii strain DSM 2075
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