STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADL43808.1PFAM: polysaccharide deacetylase; KEGG: stp:Strop_0292 polysaccharide deacetylase. (262 aa)    
Predicted Functional Partners:
ADL43811.1
KEGG: stp:Strop_4439 phytoene dehydrogenase-related protein; TIGRFAM: phytoene desaturase; PFAM: amine oxidase.
       0.575
ADL43809.1
Regulatory protein MerR; KEGG: saq:Sare_4927 MerR family transcriptional regulator; PFAM: regulatory protein MerR; SMART: regulatory protein MerR.
     
 0.571
idi
Isopentenyl-diphosphate delta-isomerase, type 1; Catalyzes the 1,3-allylic rearrangement of the homoallylic substrate isopentenyl (IPP) to its highly electrophilic allylic isomer, dimethylallyl diphosphate (DMAPP).
       0.571
ADL43812.1
PFAM: Polyprenyl synthetase; KEGG: saq:Sare_4930 polyprenyl synthetase; Belongs to the FPP/GGPP synthase family.
       0.563
ADL48350.1
PFAM: acyltransferase 3; KEGG: saq:Sare_3827 acyltransferase 3.
 
  
 0.477
ADL48730.1
PFAM: glycosyl transferase family 2; polysaccharide deacetylase; KEGG: kfl:Kfla_0731 polysaccharide deacetylase.
 
  
0.462
ADL43813.1
Phytoene synthase; KEGG: saq:Sare_4931 squalene/phytoene synthase; PFAM: Squalene/phytoene synthase.
       0.429
ADL43814.1
KEGG: sro:Sros_1613 deoxyribodipyrimidine photo-lyase; PFAM: DNA photolyase FAD-binding; DNA photolyase domain protein.
       0.417
Your Current Organism:
Micromonospora aurantiaca
NCBI taxonomy Id: 644283
Other names: M. aurantiaca ATCC 27029, Micromonospora aurantiaca ATCC 27029, Micromonospora aurantiaca str. ATCC 27029, Micromonospora aurantiaca strain ATCC 27029
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