STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADL44344.1KEGG: stp:Strop_0813 hypothetical protein. (226 aa)    
Predicted Functional Partners:
ADL44342.1
PFAM: CMP/dCMP deaminase zinc-binding; KEGG: saq:Sare_0755 cytidine deaminase.
       0.741
ADL44343.1
TIGRFAM: pyrimidine-nucleoside phosphorylase; KEGG: stp:Strop_0812 thymidine phosphorylase; PFAM: glycosyl transferase family 3; Glycosyl transferase, family 3-like; Pyrimidine nucleoside phosphorylase domain.
       0.619
ADL44340.1
PFAM: inner-membrane translocator; KEGG: saq:Sare_0753 inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.
       0.596
ADL44341.1
PFAM: inner-membrane translocator; KEGG: saq:Sare_0754 inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.
       0.586
ADL44339.1
KEGG: saq:Sare_0752 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase.
       0.578
Your Current Organism:
Micromonospora aurantiaca
NCBI taxonomy Id: 644283
Other names: M. aurantiaca ATCC 27029, Micromonospora aurantiaca ATCC 27029, Micromonospora aurantiaca str. ATCC 27029, Micromonospora aurantiaca strain ATCC 27029
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