STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADL44429.1PFAM: Rhomboid family protein; KEGG: stp:Strop_0870 rhomboid family protein. (218 aa)    
Predicted Functional Partners:
ADL47745.1
KEGG: saq:Sare_3244 band 7 protein; PFAM: band 7 protein; SMART: band 7 protein.
   
 0.776
ADL49779.1
KEGG: saq:Sare_5099 cell wall hydrolase/autolysin; PFAM: cell wall hydrolase/autolysin; Peptidoglycan-binding domain 1 protein; SMART: cell wall hydrolase/autolysin.
  
 
 0.739
ftsH
ATP-dependent metalloprotease FtsH; Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins; Belongs to the AAA ATPase family. In the central section; belongs to the AAA ATPase family.
     
 0.660
ADL44231.1
KEGG: saq:Sare_0660 hypothetical protein.
  
 
 0.633
ADL49662.1
PFAM: Rhomboid family protein; KEGG: stp:Strop_4481 rhomboid family protein.
      
 0.611
tatA
Sec-independent translocation protein mttA/Hcf106; Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin- arginine motif in their signal peptide across membranes. TatA could form the protein-conducting channel of the Tat system.
   
 
 0.582
ADL44273.1
KEGG: stp:Strop_0743 5-formyltetrahydrofolate cyclo-ligase; TIGRFAM: 5-formyltetrahydrofolate cyclo-ligase; PFAM: 5-formyltetrahydrofolate cyclo-ligase; Belongs to the 5-formyltetrahydrofolate cyclo-ligase family.
  
    0.562
ADL44430.1
PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: saq:Sare_0817 FAD-dependent pyridine nucleotide-disulphide oxidoreductase.
       0.561
ADL44428.1
KEGG: saq:Sare_0815 hypothetical protein.
       0.530
ADL44719.1
MoaD family protein; KEGG: saq:Sare_0990 thiamineS protein; TIGRFAM: MoaD family protein; PFAM: thiamineS protein.
 
     0.409
Your Current Organism:
Micromonospora aurantiaca
NCBI taxonomy Id: 644283
Other names: M. aurantiaca ATCC 27029, Micromonospora aurantiaca ATCC 27029, Micromonospora aurantiaca str. ATCC 27029, Micromonospora aurantiaca strain ATCC 27029
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