STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADL44550.1Uncharacterized protein family UPF0133; Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection; Belongs to the YbaB/EbfC family. (137 aa)    
Predicted Functional Partners:
ADL44552.1
KEGG: stp:Strop_0483 hypothetical protein.
 
     0.876
ADL44551.1
KEGG: stp:Strop_0482 hypothetical protein.
       0.819
ADL44553.1
Hypothetical protein; KEGG: son:SO_2072 histidinol-phosphate aminotransferase.
       0.737
ADL46637.1
KEGG: stp:Strop_2017 hypothetical protein.
  
     0.735
ADL46638.1
KEGG: stp:Strop_2016 hypothetical protein.
  
     0.733
ADL49397.1
Secretion protein snm4; KEGG: saq:Sare_4752 hypothetical protein; TIGRFAM: secretion protein snm4; PFAM: protein of unknown function DUF571.
  
     0.684
nfi
Deoxyribonuclease V; DNA repair enzyme involved in the repair of deaminated bases. Selectively cleaves double-stranded DNA at the second phosphodiester bond 3' to a deoxyinosine leaving behind the intact lesion on the nicked DNA.
       0.672
ADL46634.1
KEGG: saq:Sare_2926 hypothetical protein.
  
     0.636
recR
Recombination protein RecR; May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO.
  
  
 0.625
ADL46305.1
PFAM: protein of unknown function DUF690; KEGG: saq:Sare_2228 hypothetical protein.
  
    0.580
Your Current Organism:
Micromonospora aurantiaca
NCBI taxonomy Id: 644283
Other names: M. aurantiaca ATCC 27029, Micromonospora aurantiaca ATCC 27029, Micromonospora aurantiaca str. ATCC 27029, Micromonospora aurantiaca strain ATCC 27029
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.