node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
ADL43571.1 | ADL44051.1 | Micau_0002 | Micau_0484 | DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | KEGG: saq:Sare_4352 DNA polymerase LigD ligase region; TIGRFAM: DNA polymerase LigD, ligase domain protein; PFAM: ATP dependent DNA ligase; ATP dependent DNA ligase domain protein. | 0.883 |
ADL43571.1 | ADL44706.1 | Micau_0002 | Micau_1144 | DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | KEGG: cai:Caci_5248 DNA polymerase LigD, ligase domain protein; TIGRFAM: DNA ligase D, 3'-phosphoesterase domain protein; PFAM: ATP dependent DNA ligase. | 0.883 |
ADL43571.1 | ADL49471.1 | Micau_0002 | Micau_5968 | DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | PHP domain protein; KEGG: saq:Sare_0226 hypothetical protein; PFAM: PHP domain protein; SMART: phosphoesterase PHP domain protein. | 0.662 |
ADL44051.1 | ADL43571.1 | Micau_0484 | Micau_0002 | KEGG: saq:Sare_4352 DNA polymerase LigD ligase region; TIGRFAM: DNA polymerase LigD, ligase domain protein; PFAM: ATP dependent DNA ligase; ATP dependent DNA ligase domain protein. | DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | 0.883 |
ADL44051.1 | ADL44052.1 | Micau_0484 | Micau_0485 | KEGG: saq:Sare_4352 DNA polymerase LigD ligase region; TIGRFAM: DNA polymerase LigD, ligase domain protein; PFAM: ATP dependent DNA ligase; ATP dependent DNA ligase domain protein. | TIGRFAM: DNA polymerase LigD, polymerase domain protein; KEGG: saq:Sare_4351 DNA polymerase LigD polymerase subunit. | 0.999 |
ADL44051.1 | ADL44706.1 | Micau_0484 | Micau_1144 | KEGG: saq:Sare_4352 DNA polymerase LigD ligase region; TIGRFAM: DNA polymerase LigD, ligase domain protein; PFAM: ATP dependent DNA ligase; ATP dependent DNA ligase domain protein. | KEGG: cai:Caci_5248 DNA polymerase LigD, ligase domain protein; TIGRFAM: DNA ligase D, 3'-phosphoesterase domain protein; PFAM: ATP dependent DNA ligase. | 0.927 |
ADL44051.1 | ADL45191.1 | Micau_0484 | Micau_1636 | KEGG: saq:Sare_4352 DNA polymerase LigD ligase region; TIGRFAM: DNA polymerase LigD, ligase domain protein; PFAM: ATP dependent DNA ligase; ATP dependent DNA ligase domain protein. | KEGG: stp:Strop_1543 DNA primase, small subunit; TIGRFAM: DNA polymerase LigD, polymerase domain protein; PFAM: DNA primase small subunit. | 0.977 |
ADL44051.1 | ADL46976.1 | Micau_0484 | Micau_3448 | KEGG: saq:Sare_4352 DNA polymerase LigD ligase region; TIGRFAM: DNA polymerase LigD, ligase domain protein; PFAM: ATP dependent DNA ligase; ATP dependent DNA ligase domain protein. | PFAM: DNA primase small subunit; KEGG: saq:Sare_2236 DNA primase small subunit. | 0.977 |
ADL44051.1 | ADL48244.1 | Micau_0484 | Micau_4735 | KEGG: saq:Sare_4352 DNA polymerase LigD ligase region; TIGRFAM: DNA polymerase LigD, ligase domain protein; PFAM: ATP dependent DNA ligase; ATP dependent DNA ligase domain protein. | DNA polymerase III beta chain; KEGG: saq:Sare_0479 MerR family transcriptional regulator; PFAM: DNA polymerase III beta chain; regulatory protein MerR; SMART: regulatory protein MerR; DNA polymerase III beta chain. | 0.883 |
ADL44051.1 | ADL48679.1 | Micau_0484 | Micau_5172 | KEGG: saq:Sare_4352 DNA polymerase LigD ligase region; TIGRFAM: DNA polymerase LigD, ligase domain protein; PFAM: ATP dependent DNA ligase; ATP dependent DNA ligase domain protein. | TIGRFAM: DNA polymerase LigD, polymerase domain protein; KEGG: saq:Sare_4039 DNA polymerase LigD polymerase subunit. | 0.997 |
ADL44051.1 | ADL49471.1 | Micau_0484 | Micau_5968 | KEGG: saq:Sare_4352 DNA polymerase LigD ligase region; TIGRFAM: DNA polymerase LigD, ligase domain protein; PFAM: ATP dependent DNA ligase; ATP dependent DNA ligase domain protein. | PHP domain protein; KEGG: saq:Sare_0226 hypothetical protein; PFAM: PHP domain protein; SMART: phosphoesterase PHP domain protein. | 0.860 |
ADL44051.1 | ku | Micau_0484 | Micau_0483 | KEGG: saq:Sare_4352 DNA polymerase LigD ligase region; TIGRFAM: DNA polymerase LigD, ligase domain protein; PFAM: ATP dependent DNA ligase; ATP dependent DNA ligase domain protein. | Ku protein; With LigD forms a non-homologous end joining (NHEJ) DNA repair enzyme, which repairs dsDNA breaks with reduced fidelity. Binds linear dsDNA with 5'- and 3'- overhangs but not closed circular dsDNA nor ssDNA. Recruits and stimulates the ligase activity of LigD. Belongs to the prokaryotic Ku family. | 0.929 |
ADL44052.1 | ADL44051.1 | Micau_0485 | Micau_0484 | TIGRFAM: DNA polymerase LigD, polymerase domain protein; KEGG: saq:Sare_4351 DNA polymerase LigD polymerase subunit. | KEGG: saq:Sare_4352 DNA polymerase LigD ligase region; TIGRFAM: DNA polymerase LigD, ligase domain protein; PFAM: ATP dependent DNA ligase; ATP dependent DNA ligase domain protein. | 0.999 |
ADL44052.1 | ADL44706.1 | Micau_0485 | Micau_1144 | TIGRFAM: DNA polymerase LigD, polymerase domain protein; KEGG: saq:Sare_4351 DNA polymerase LigD polymerase subunit. | KEGG: cai:Caci_5248 DNA polymerase LigD, ligase domain protein; TIGRFAM: DNA ligase D, 3'-phosphoesterase domain protein; PFAM: ATP dependent DNA ligase. | 0.998 |
ADL44052.1 | ADL48679.1 | Micau_0485 | Micau_5172 | TIGRFAM: DNA polymerase LigD, polymerase domain protein; KEGG: saq:Sare_4351 DNA polymerase LigD polymerase subunit. | TIGRFAM: DNA polymerase LigD, polymerase domain protein; KEGG: saq:Sare_4039 DNA polymerase LigD polymerase subunit. | 0.920 |
ADL44052.1 | ADL49471.1 | Micau_0485 | Micau_5968 | TIGRFAM: DNA polymerase LigD, polymerase domain protein; KEGG: saq:Sare_4351 DNA polymerase LigD polymerase subunit. | PHP domain protein; KEGG: saq:Sare_0226 hypothetical protein; PFAM: PHP domain protein; SMART: phosphoesterase PHP domain protein. | 0.414 |
ADL44052.1 | ku | Micau_0485 | Micau_0483 | TIGRFAM: DNA polymerase LigD, polymerase domain protein; KEGG: saq:Sare_4351 DNA polymerase LigD polymerase subunit. | Ku protein; With LigD forms a non-homologous end joining (NHEJ) DNA repair enzyme, which repairs dsDNA breaks with reduced fidelity. Binds linear dsDNA with 5'- and 3'- overhangs but not closed circular dsDNA nor ssDNA. Recruits and stimulates the ligase activity of LigD. Belongs to the prokaryotic Ku family. | 0.961 |
ADL44705.1 | ADL44706.1 | Micau_1143 | Micau_1144 | KEGG: aha:AHA_0766 threonine synthase; TIGRFAM: threonine synthase; PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit. | KEGG: cai:Caci_5248 DNA polymerase LigD, ligase domain protein; TIGRFAM: DNA ligase D, 3'-phosphoesterase domain protein; PFAM: ATP dependent DNA ligase. | 0.783 |
ADL44706.1 | ADL43571.1 | Micau_1144 | Micau_0002 | KEGG: cai:Caci_5248 DNA polymerase LigD, ligase domain protein; TIGRFAM: DNA ligase D, 3'-phosphoesterase domain protein; PFAM: ATP dependent DNA ligase. | DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | 0.883 |
ADL44706.1 | ADL44051.1 | Micau_1144 | Micau_0484 | KEGG: cai:Caci_5248 DNA polymerase LigD, ligase domain protein; TIGRFAM: DNA ligase D, 3'-phosphoesterase domain protein; PFAM: ATP dependent DNA ligase. | KEGG: saq:Sare_4352 DNA polymerase LigD ligase region; TIGRFAM: DNA polymerase LigD, ligase domain protein; PFAM: ATP dependent DNA ligase; ATP dependent DNA ligase domain protein. | 0.927 |