STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADL45736.1KEGG: fra:Francci3_3755 sigma 28 subunit; TIGRFAM: RNA polymerase sigma-70 factor, sigma-B/F/G subfamily; RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 4 domain protein; sigma-70 region 2 domain protein; sigma-70 region 3 domain protein. (273 aa)    
Predicted Functional Partners:
rpoB
DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
  
 
 
 0.919
rpoC
DNA-directed RNA polymerase, beta' subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
  
 
 
 0.912
ADL48743.1
KEGG: saq:Sare_4078 putative anti-sigma regulatory factor, serine/threonine protein kinase.
 
 
 0.905
ADL47214.1
TIGRFAM: PAS sensor protein; PFAM: Stage II sporulation protein E; response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-4 domain protein; KEGG: kfl:Kfla_4457 multi-sensor signal transduction histidine kinase; SMART: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS domain containing protein; protein phosphatase 2C domain protein.
  
 
 0.899
ADL43896.1
ATP-binding region ATPase domain protein; KEGG: sna:Snas_1053 GAF sensor hybrid histidine kinase; PFAM: ATP-binding region ATPase domain protein; response regulator receiver; histidine kinase HAMP region domain protein; histidine kinase A domain protein; GAF domain protein; SMART: ATP-binding region ATPase domain protein; response regulator receiver; histidine kinase A domain protein; histidine kinase HAMP region domain protein; GAF domain protein.
  
  
 0.815
ADL45011.1
Stage II sporulation protein E; KEGG: sro:Sros_7544 signal transduction histidine kinase-like protein; PFAM: Stage II sporulation protein E; response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: protein phosphatase 2C domain protein; response regulator receiver; histidine kinase A domain protein; ATP-binding region ATPase domain protein; GAF domain protein.
  
 
 0.789
ADL45751.1
Stage II sporulation protein E; KEGG: sma:SAV_7504 magnesium or manganese-dependent protein phosphatase; PFAM: Stage II sporulation protein E; PAS fold-4 domain protein; ATP-binding region ATPase domain protein; SMART: protein phosphatase 2C domain protein; ATP-binding region ATPase domain protein; PAS domain containing protein; GAF domain protein.
 
 
 0.748
rpoA
DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
  
 
 
 0.702
ADL43828.1
KEGG: saq:Sare_4972 SAF domain-containing protein; PFAM: SAF domain protein; SMART: SAF domain protein.
  
  
 0.634
ADL49572.1
PFAM: SAF domain protein; KEGG: cai:Caci_4029 SAF domain protein.
  
  
 0.634
Your Current Organism:
Micromonospora aurantiaca
NCBI taxonomy Id: 644283
Other names: M. aurantiaca ATCC 27029, Micromonospora aurantiaca ATCC 27029, Micromonospora aurantiaca str. ATCC 27029, Micromonospora aurantiaca strain ATCC 27029
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.