STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADL47052.1KEGG: cak:Caul_1571 hypothetical protein. (202 aa)    
Predicted Functional Partners:
ADL47053.1
KEGG: mxa:MXAN_6364 hypothetical protein.
       0.864
ADL46451.1
PFAM: phosphatidylinositol 3- and 4-kinase catalytic; KEGG: saq:Sare_2321 hypothetical protein.
    
 0.790
ADL46926.1
KEGG: gob:Gobs_1243 dual specificity protein phosphatase.
   
 0.783
ADL48184.1
SNF2-related protein; KEGG: saq:Sare_3603 non-specific serine/threonine protein kinase; PFAM: SNF2-related protein; helicase domain protein; SMART: DEAD-like helicase; helicase domain protein.
   
 0.782
alaS
alanyl-tRNA synthetase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain.
   
 0.772
ADL46248.1
Alanine--tRNA ligase; KEGG: sco:SCO7600 alanyl tRNA synthetase; PFAM: Alanyl-tRNA synthetase, class IIc-like.
   
 0.772
ADL47051.1
KEGG: sna:Snas_5776 hypothetical protein.
       0.771
rpoB
DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 0.760
ADL47054.1
KEGG: aau:AAur_3609 putative phage tail sheath family protein.
       0.758
ADL47055.1
KEGG: aau:AAur_3610 hypothetical protein; TIGRFAM: conserved hypothetical protein; PFAM: Phage T4-like virus tail tube gp19.
       0.747
Your Current Organism:
Micromonospora aurantiaca
NCBI taxonomy Id: 644283
Other names: M. aurantiaca ATCC 27029, Micromonospora aurantiaca ATCC 27029, Micromonospora aurantiaca str. ATCC 27029, Micromonospora aurantiaca strain ATCC 27029
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.