STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADL47559.1KEGG: tcu:Tcur_4523 TPR repeat-containing protein. (509 aa)    
Predicted Functional Partners:
ADL43641.1
PFAM: ATP-binding region ATPase domain protein; KEGG: tcu:Tcur_4208 ATP-binding region ATPase domain protein.
  
 0.680
ADL46895.1
WD40 repeat, subgroup; KEGG: sro:Sros_2975 WD40 repeatdomain-containing protein-like protein; PFAM: WD40 repeat, subgroup; pentapeptide repeat protein; SMART: TIR protein; WD-40 repeat-containing protein.
 
 0.676
ADL46170.1
KEGG: fre:Franean1_0399 hypothetical protein.
  
     0.642
ADL43847.1
WD40 repeat, subgroup; KEGG: sgr:SGR_686 WD repeat-containing protein; PFAM: WD40 repeat, subgroup; SMART: WD-40 repeat-containing protein.
  
 
 0.629
ADL45329.1
WD40 repeat, subgroup; KEGG: rrs:RoseRS_4025 NB-ARC domain-containing protein; PFAM: WD40 repeat, subgroup; SMART: WD-40 repeat-containing protein.
  
 
 0.603
alaS
alanyl-tRNA synthetase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain.
   
 0.569
ADL46248.1
Alanine--tRNA ligase; KEGG: sco:SCO7600 alanyl tRNA synthetase; PFAM: Alanyl-tRNA synthetase, class IIc-like.
   
 0.569
htpG
Heat shock protein Hsp90-like; Molecular chaperone. Has ATPase activity.
   
 0.569
rpoA
DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 0.561
rpoB
DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
  
 0.540
Your Current Organism:
Micromonospora aurantiaca
NCBI taxonomy Id: 644283
Other names: M. aurantiaca ATCC 27029, Micromonospora aurantiaca ATCC 27029, Micromonospora aurantiaca str. ATCC 27029, Micromonospora aurantiaca strain ATCC 27029
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.