STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADL47583.1KEGG: stp:Strop_2856 cobalamin synthesis CobW domain-containing protein; PFAM: cobalamin synthesis CobW domain protein; cobalamin synthesis protein P47K; SMART: cobalamin synthesis CobW domain protein. (433 aa)    
Predicted Functional Partners:
rpmB-2
KEGG: stp:Strop_2855 ribosomal protein L28; TIGRFAM: ribosomal protein L28; PFAM: ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family.
  
  
 0.902
rpsN
Ribosomal protein S14; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site; Belongs to the universal ribosomal protein uS14 family.
  
 
 0.900
rpmE2
KEGG: stp:Strop_2857 50S ribosomal protein L31 type B; TIGRFAM: ribosomal protein L31; PFAM: ribosomal protein L31.
  
  
 0.870
rpmG
KEGG: saq:Sare_2904 50S ribosomal protein L33; TIGRFAM: ribosomal protein L33; PFAM: ribosomal protein L33; Belongs to the bacterial ribosomal protein bL33 family.
 
  
 0.833
ADL47586.1
PFAM: ferric-uptake regulator; KEGG: stp:Strop_2859 ferric-uptake regulator; Belongs to the Fur family.
     
 0.796
ADL47585.1
PFAM: Methyltransferase type 12; KEGG: stp:Strop_2858 methyltransferase type 12.
       0.773
ADL47576.1
PFAM: periplasmic solute binding protein; KEGG: saq:Sare_2620 periplasmic solute binding protein; Belongs to the bacterial solute-binding protein 9 family.
  
  
 0.746
ADL48330.1
PFAM: periplasmic solute binding protein; KEGG: saq:Sare_3814 periplasmic solute binding protein; Belongs to the bacterial solute-binding protein 9 family.
  
  
 0.694
ADL47579.1
KEGG: saq:Sare_2623 hypothetical protein.
  
  
 0.661
rpsZ
Ribosomal protein S14; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site.
  
 
 0.625
Your Current Organism:
Micromonospora aurantiaca
NCBI taxonomy Id: 644283
Other names: M. aurantiaca ATCC 27029, Micromonospora aurantiaca ATCC 27029, Micromonospora aurantiaca str. ATCC 27029, Micromonospora aurantiaca strain ATCC 27029
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