STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADL47814.1PFAM: Uracil-DNA glycosylase superfamily; KEGG: scb:SCAB_78041 G/U mismatch-specific DNA glycosylase. (206 aa)    
Predicted Functional Partners:
ADL47813.1
PFAM: short-chain dehydrogenase/reductase SDR; KEGG: stp:Strop_3070 short-chain dehydrogenase/reductase SDR.
       0.837
ADL45259.1
PFAM: Endonuclease/exonuclease/phosphatase; KEGG: bpy:Bphyt_0286 endonuclease/exonuclease/phosphatase.
  
 
 0.770
ADL45717.1
KEGG: saq:Sare_1721 exodeoxyribonuclease III Xth; TIGRFAM: exodeoxyribonuclease III Xth; exodeoxyribonuclease III; PFAM: Endonuclease/exonuclease/phosphatase.
  
 
 0.770
ADL47811.1
PFAM: protein of unknown function DUF692; KEGG: saq:Sare_3295 hypothetical protein.
       0.557
ADL47812.1
KEGG: saq:Sare_3296 hypothetical protein.
       0.544
ADL47810.1
KEGG: saq:Sare_3294 hypothetical protein.
       0.518
Your Current Organism:
Micromonospora aurantiaca
NCBI taxonomy Id: 644283
Other names: M. aurantiaca ATCC 27029, Micromonospora aurantiaca ATCC 27029, Micromonospora aurantiaca str. ATCC 27029, Micromonospora aurantiaca strain ATCC 27029
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