STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Arch_0011Sulfatase; COGs: COG1368 Phosphoglycerol transferase and related protein alkaline phosphatase superfamily; InterPro IPR000917:IPR017849:IPR017850; KEGG: sca:Sca_2153 hypothetical protein; PFAM: sulfatase; SPTR: B9DJW2 Putative uncharacterized protein; PFAM: Sulfatase. (605 aa)    
Predicted Functional Partners:
Arch_0228
LPXTG-motif cell wall anchor domain protein; InterPro IPR019931; KEGG: cdi:DIP0235 putative fimbrial subunit; SPTR: Q6NK05 Putative fimbrial subunit; TIGRFAM: LPXTG-motif cell wall anchor domain protein; TIGRFAM: LPXTG-motif cell wall anchor domain.
  
     0.475
Arch_0229
COGs: COG3764 Sortase (surface protein transpeptidase); InterPro IPR005754; KEGG: cjk:jk1700 putative fimbrial associated sortase-like protein; PFAM: peptidase C60 sortase A and B; SPTR: Q4JTI0 Putative fimbrial associated sortase-like protein; TIGRFAM: sortase family protein; PFAM: Sortase family; TIGRFAM: LPXTG-site transpeptidase (sortase) family protein.
  
     0.428
Arch_0982
KEGG: hypothetical protein; SPTR: C1FFK9 Predicted protein.
 
     0.422
Arch_1735
Integrin alpha beta-propellor repeat protein; InterPro IPR013519; KEGG: ITGA1; integrin, alpha 1; K06480 integrin alpha 1; SMART: Integrin alpha beta-propellor repeat protein; SPTR: C2KTJ5 FG-GAP repeat domain protein.
  
  
 0.422
Arch_1734
Hypothetical protein; InterPro IPR013519; KEGG: hau:Haur_4585 FG-GAP repeat-containing protein; SPTR: D0YPS4 FG-GAP repeat protein; TIGRFAM: LPXTG-motif cell wall anchor domain.
  
  
 0.419
Your Current Organism:
Arcanobacterium haemolyticum
NCBI taxonomy Id: 644284
Other names: A. haemolyticum DSM 20595, Arcanobacterium haemolyticum ATCC 9345, Arcanobacterium haemolyticum CIP 103370, Arcanobacterium haemolyticum DSM 20595, Arcanobacterium haemolyticum str. DSM 20595, Arcanobacterium haemolyticum strain DSM 20595
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