STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Arch_0012Aminoglycoside phosphotransferase; InterPro IPR002575:IPR011009; KEGG: blj:BLD_1766 putative homoserine kinase type II; PFAM: aminoglycoside phosphotransferase; SPTR: A7BJ81 N-acetylhexosamine kinase; PFAM: Phosphotransferase enzyme family. (358 aa)    
Predicted Functional Partners:
Arch_0013
Conserved hypothetical protein; InterPro IPR012711; KEGG: blj:BLD_1765 Lacto-N-biose phosphorylase; PFAM: conserved hypothetical protein; SPTR: B3DQH2 Lacto-N-biose phosphorylase; PFAM: Lacto-N-biose phosphorylase; TIGRFAM: conserved hypothetical protein TIGR02336.
 
   
 0.958
Arch_1292
LPXTG-motif cell wall anchor domain protein; COGs: COG3250 Beta-galactosidase/beta-glucuronidase; InterProIPR000421:IPR006104:IPR006102:IPR006103:IPR 011081:IPR011080:IPR013781:IPR019931:IPR017853:IPR008979:I PR006101; KEGG: apv:Apar_0102 glycoside hydrolase family 2 sugar binding; PFAM: glycoside hydrolase family 2 sugar binding; glycoside hydrolase family 2 immunoglobulin domain protein beta-sandwich; glycoside hydrolase family 2 TIM barrel; Ig domain protein; coagulation factor 5/8 type domain protein; SPTR: A4K5H9 Beta-galactosidase BbgIII; TIGRFAM: LPXTG-motif cell wall anchor dom [...]
 
   
 0.578
Arch_0014
ROK family protein; COGs: COG1940 Transcriptional regulator/sugar kinase; InterPro IPR001367:IPR000600; KEGG: stp:Strop_4335 ROK family protein; PFAM: ROK family protein; iron dependent repressor; SPTR: C0W0N6 Transcriptional regulator; PFAM: ROK family; IclR helix-turn-helix domain.
       0.508
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
     
 0.452
Arch_1490
Radical SAM domain protein; COGs: COG0641 Arylsulfatase regulator (Fe-S oxidoreductase); InterPro IPR007197; KEGG: tmz:Tmz1t_1479 radical SAM domain protein; PFAM: Radical SAM domain protein; SPTR: D0YU66 Anaerobic sulfatase-maturating enzyme; PFAM: Radical SAM superfamily.
  
     0.428
Your Current Organism:
Arcanobacterium haemolyticum
NCBI taxonomy Id: 644284
Other names: A. haemolyticum DSM 20595, Arcanobacterium haemolyticum ATCC 9345, Arcanobacterium haemolyticum CIP 103370, Arcanobacterium haemolyticum DSM 20595, Arcanobacterium haemolyticum str. DSM 20595, Arcanobacterium haemolyticum strain DSM 20595
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