STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Arch_0059COGs: COG1216 glycosyltransferase; InterPro IPR001173; KEGG: sen:SACE_6472 putative dTDP-rhamnosyl transferase; PFAM: glycosyl transferase family 2; SPTR: C0W8B3 dTDP-rhamnosyl transferase; PFAM: Glycosyl transferase family 2. (292 aa)    
Predicted Functional Partners:
Arch_0089
COGs: COG1898 dTDP-4-dehydrorhamnose 3 5-epimerase; InterPro IPR000888:IPR014710:IPR011051; KEGG: xce:Xcel_2560 dTDP-4-dehydrorhamnose 3,5-epimerase; PFAM: dTDP-4-dehydrorhamnose 35-epimerase related; PRIAM: dTDP-4-dehydrorhamnose 3,5-epimerase; SPTR: D0WPJ1 dTDP-4-dehydrorhamnose 3,5-epimerase; PFAM: dTDP-4-dehydrorhamnose 3,5-epimerase; TIGRFAM: dTDP-4-dehydrorhamnose 3,5-epimerase.
 
  
 0.818
Arch_0086
dTDP-4-dehydrorhamnose reductase; Catalyzes the reduction of dTDP-6-deoxy-L-lyxo-4-hexulose to yield dTDP-L-rhamnose.
 
  
 0.801
Arch_0069
ABC-2 type transporter; COGs: COG1682 ABC-type polysaccharide/polyol phosphate export systems permease component; InterPro IPR013525:IPR000412; KEGG: lxx:Lxx05020 lipopolysaccharide exporter; PFAM: ABC-2 type transporter; SPTR: C0W8E3 Polysaccharide ABC superfamily ATP binding cassette transporter, membrane protein; PFAM: ABC-2 type transporter.
 
  
 0.598
Arch_0068
ABC transporter related protein; COGs: COG1134 ABC-type polysaccharide/polyol phosphate transport system ATPase component; InterPro IPR003593:IPR003439; KEGG: lxx:Lxx05010 lipopolysaccharide exporter; PFAM: ABC transporter related; SMART: AAA ATPase; SPTR: C1RIM8 ABC-type polysaccharide/polyol phosphate transport system, ATPase component; PFAM: ABC transporter.
 
  
 0.576
Arch_0067
dTDP-glucose 4,6-dehydratase; COGs: COG1088 dTDP-D-glucose 4 6-dehydratase; InterPro IPR001509:IPR016040:IPR005888; KEGG: xce:Xcel_2563 dTDP-glucose 4,6-dehydratase; PFAM: NAD-dependent epimerase/dehydratase; SPTR: D0WPK4 dTDP-glucose 4,6-dehydratase; TIGRFAM: dTDP-glucose 4,6-dehydratase; PFAM: NAD dependent epimerase/dehydratase family; TIGRFAM: dTDP-glucose 4,6-dehydratase; Belongs to the NAD(P)-dependent epimerase/dehydratase family. dTDP-glucose dehydratase subfamily.
 
  
 0.556
Arch_0058
CutC family protein; COGs: COG3142 Uncharacterized protein involved in copper resistance; InterPro IPR005627; KEGG: sma:SAV_3917 homeostasis protein; PFAM: CutC family protein; SPTR: Q82GI0 Putative homeostasis protein; PFAM: CutC family; Belongs to the CutC family.
       0.505
Arch_0060
COGs: COG0584 Glycerophosphoryl diester phosphodiesterase; InterPro IPR004129:IPR017946:IPR000909; KEGG: pac:PPA1839 glycerophosphoryl diester phosphodiesterase; PFAM: glycerophosphoryl diester phosphodiesterase; SPTR: D0YTV4 Glycerophosphoryl diester phosphodiesterase; PFAM: Glycerophosphoryl diester phosphodiesterase family.
       0.499
Arch_0093
Glucose-1-phosphate thymidylyltransferase; Catalyzes the formation of dTDP-glucose, from dTTP and glucose 1-phosphate, as well as its pyrophosphorolysis. Belongs to the glucose-1-phosphate thymidylyltransferase family.
  
  
 0.490
Arch_0092
Rhamnosyltransferase; COGs: COG1216 glycosyltransferase; InterPro IPR001173:IPR006446; KEGG: ajs:Ajs_0541 rhamnosyltransferase; PFAM: glycosyl transferase family 2; SPTR: D0WPJ2 Rhamnosyltransferase; TIGRFAM: rhamnosyltransferase; PFAM: Glycosyl transferase family 2; TIGRFAM: L-rhamnosyltransferase.
  
     0.426
Your Current Organism:
Arcanobacterium haemolyticum
NCBI taxonomy Id: 644284
Other names: A. haemolyticum DSM 20595, Arcanobacterium haemolyticum ATCC 9345, Arcanobacterium haemolyticum CIP 103370, Arcanobacterium haemolyticum DSM 20595, Arcanobacterium haemolyticum str. DSM 20595, Arcanobacterium haemolyticum strain DSM 20595
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