STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Arch_0071COGs: COG1216 glycosyltransferase; InterPro IPR001173:IPR001296; KEGG: nml:Namu_4203 glycosyl transferase family 2; PFAM: glycosyl transferase family 2; glycosyl transferase group 1; SPTR: C1RIN5 Predicted glycosyltransferase (Fragment); PFAM: Glycosyl transferases group 1; Glycosyl transferase family 2; TIGRFAM: glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type. (812 aa)    
Predicted Functional Partners:
Arch_0069
ABC-2 type transporter; COGs: COG1682 ABC-type polysaccharide/polyol phosphate export systems permease component; InterPro IPR013525:IPR000412; KEGG: lxx:Lxx05020 lipopolysaccharide exporter; PFAM: ABC-2 type transporter; SPTR: C0W8E3 Polysaccharide ABC superfamily ATP binding cassette transporter, membrane protein; PFAM: ABC-2 type transporter.
 
  
 0.887
Arch_0089
COGs: COG1898 dTDP-4-dehydrorhamnose 3 5-epimerase; InterPro IPR000888:IPR014710:IPR011051; KEGG: xce:Xcel_2560 dTDP-4-dehydrorhamnose 3,5-epimerase; PFAM: dTDP-4-dehydrorhamnose 35-epimerase related; PRIAM: dTDP-4-dehydrorhamnose 3,5-epimerase; SPTR: D0WPJ1 dTDP-4-dehydrorhamnose 3,5-epimerase; PFAM: dTDP-4-dehydrorhamnose 3,5-epimerase; TIGRFAM: dTDP-4-dehydrorhamnose 3,5-epimerase.
 
  
 0.886
Arch_0068
ABC transporter related protein; COGs: COG1134 ABC-type polysaccharide/polyol phosphate transport system ATPase component; InterPro IPR003593:IPR003439; KEGG: lxx:Lxx05010 lipopolysaccharide exporter; PFAM: ABC transporter related; SMART: AAA ATPase; SPTR: C1RIM8 ABC-type polysaccharide/polyol phosphate transport system, ATPase component; PFAM: ABC transporter.
 
 
 0.852
Arch_0067
dTDP-glucose 4,6-dehydratase; COGs: COG1088 dTDP-D-glucose 4 6-dehydratase; InterPro IPR001509:IPR016040:IPR005888; KEGG: xce:Xcel_2563 dTDP-glucose 4,6-dehydratase; PFAM: NAD-dependent epimerase/dehydratase; SPTR: D0WPK4 dTDP-glucose 4,6-dehydratase; TIGRFAM: dTDP-glucose 4,6-dehydratase; PFAM: NAD dependent epimerase/dehydratase family; TIGRFAM: dTDP-glucose 4,6-dehydratase; Belongs to the NAD(P)-dependent epimerase/dehydratase family. dTDP-glucose dehydratase subfamily.
  
  
 0.816
Arch_0070
Hypothetical protein; KEGG: nml:Namu_4203 glycosyl transferase family 2; SPTR: C1RIN5 Predicted glycosyltransferase (Fragment).
       0.800
Arch_0072
COGs: COG0463 Glycosyltransferase involved in cell wall biogenesis; InterPro IPR001173; KEGG: bfa:Bfae_20890 glycosyl transferase; PFAM: glycosyl transferase family 2; SPTR: C7ME89 Glycosyl transferase; PFAM: Glycosyl transferase family 2.
  
 
 0.772
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
  
 
 0.744
glgB
1,4-alpha-glucan branching enzyme; Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position; Belongs to the glycosyl hydrolase 13 family. GlgB subfamily.
   
 0.720
Arch_0800
Malto-oligosyltrehalose trehalohydrolase; COGs: COG0296 1 4-alpha-glucan branching enzyme; InterProIPR017853:IPR014756:IPR006589:IPR012768:IPR 013783:IPR013781:IPR004193:IPR006047; KEGG: bcv:Bcav_1971 malto-oligosyltrehalose trehalohydrolase; PFAM: alpha amylase catalytic region; glycoside hydrolase family 13 domain protein; SMART: alpha amylase catalytic sub domain; SPTR: C5C5N5 Malto-oligosyltrehalose trehalohydrolase; TIGRFAM: malto-oligosyltrehalose trehalohydrolase; PFAM: Alpha amylase, catalytic domain; TIGRFAM: malto-oligosyltrehalose trehalohydrolase.
   
 0.720
Arch_0073
KEGG: cai:Caci_8173 hypothetical protein; SPTR: C0VZS1 Putative uncharacterized protein; PFAM: Uncharacterized conserved protein (DUF2304).
       0.715
Your Current Organism:
Arcanobacterium haemolyticum
NCBI taxonomy Id: 644284
Other names: A. haemolyticum DSM 20595, Arcanobacterium haemolyticum ATCC 9345, Arcanobacterium haemolyticum CIP 103370, Arcanobacterium haemolyticum DSM 20595, Arcanobacterium haemolyticum str. DSM 20595, Arcanobacterium haemolyticum strain DSM 20595
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