STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Arch_0081LicD family protein; COGs: COG3475 LPS biosynthesis protein; InterPro IPR007074; KEGG: apv:Apar_1000 LicD family protein; PFAM: LicD family protein; SPTR: C0W8F2 Possible lipopolysaccharide cholinephosphotransferase; PFAM: LICD Protein Family. (286 aa)    
Predicted Functional Partners:
Arch_0083
Transcriptional regulator, MarR family; COGs: COG4750 CTP:phosphocholine cytidylyltransferase involved in choline phosphorylation for cell surface LPS epitopes; InterPro IPR000835:IPR002573:IPR011009; KEGG: apv:Apar_1003 transcriptional regulator, MarR family; PFAM: Choline/ethanolamine kinase; regulatory protein MarR; SPTR: A7BEG2 Putative uncharacterized protein; PFAM: Choline/ethanolamine kinase; Nucleotidyl transferase.
 
   
 0.983
Arch_0082
InterPro IPR000620; KEGG: ccu:Ccur_08310 integral membrane protein DUF6; PFAM: protein of unknown function DUF6 transmembrane; SPTR: C0W8F3 Integral membrane protein; PFAM: EamA-like transporter family.
 
   
 0.865
Arch_0085
InterPro IPR002797; KEGG: apv:Apar_0999 polysaccharide biosynthesis protein; PFAM: polysaccharide biosynthesis protein; SPTR: C0W8F7 Putative uncharacterized protein; PFAM: Polysaccharide biosynthesis protein.
 
   
 0.815
Arch_0084
COGs: COG0438 Glycosyltransferase; InterPro IPR001296; KEGG: ape:APE_2066.1 glycosyl transferase, group 1; PFAM: glycosyl transferase group 1; SPTR: C0W8F1 N-acetylglucosaminyl-phosphatidylinositol biosynthetic protein; PFAM: Glycosyl transferases group 1.
 
     0.686
Arch_0094
InterPro IPR000620; KEGG: ccu:Ccur_08310 integral membrane protein DUF6; PFAM: protein of unknown function DUF6 transmembrane; SPTR: C0W8F3 Integral membrane protein; PFAM: EamA-like transporter family.
 
   
 0.429
Your Current Organism:
Arcanobacterium haemolyticum
NCBI taxonomy Id: 644284
Other names: A. haemolyticum DSM 20595, Arcanobacterium haemolyticum ATCC 9345, Arcanobacterium haemolyticum CIP 103370, Arcanobacterium haemolyticum DSM 20595, Arcanobacterium haemolyticum str. DSM 20595, Arcanobacterium haemolyticum strain DSM 20595
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.