STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Arch_0486COGs: COG1966 Carbon starvation protein predicted membrane protein; InterPro IPR003706; KEGG: krh:KRH_18870 carbon starvation protein; PFAM: carbon starvation protein CstA; SPTR: D0WP83 Carbon starvation protein A; PFAM: Carbon starvation protein CstA. (785 aa)    
Predicted Functional Partners:
Arch_0487
Protein of unknown function DUF466; InterPro IPR007423; KEGG: mlu:Mlut_08620 uncharacterized small protein; PFAM: protein of unknown function DUF466; SPTR: D0WP82 Putative uncharacterized protein; PFAM: Protein of unknown function (DUF466).
 
  
 0.960
Arch_1010
Sodium/proline symporter; Catalyzes the sodium-dependent uptake of extracellular L- proline; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.
  
    0.693
Arch_1425
KEGG: xce:Xcel_2550 hypothetical protein; SPTR: D1BWZ7 Putative uncharacterized protein; TIGRFAM: conserved hypothetical protein TIGR03089.
   
  
 0.599
Arch_0049
COGs: COG1012 NAD-dependent aldehyde dehydrogenase; InterPro IPR015590:IPR016162:IPR010061:IPR016161; KEGG: pac:PPA0461 methylmalonic acid semialdehyde dehydrogenase; PFAM: Aldehyde Dehydrogenase; SPTR: C0W6L2 Methylmalonate-semialdehyde dehydrogenase (Acylating); TIGRFAM: methylmalonate-semialdehyde dehydrogenase; PFAM: Aldehyde dehydrogenase family; TIGRFAM: methylmalonic acid semialdehyde dehydrogenase.
   
    0.467
murC
UDP-N-acetylmuramate/alanine ligase; Cell wall formation; Belongs to the MurCDEF family.
      
 0.410
Arch_0022
Protein of unknown function DUF162; COGs: COG1556 conserved hypothetical protein; InterPro IPR003741; KEGG: nml:Namu_5228 protein of unknown function DUF162; PFAM: protein of unknown function DUF162; SPTR: A7BE65 Putative uncharacterized protein; PFAM: Uncharacterised ACR, YkgG family COG1556.
   
  
 0.408
Your Current Organism:
Arcanobacterium haemolyticum
NCBI taxonomy Id: 644284
Other names: A. haemolyticum DSM 20595, Arcanobacterium haemolyticum ATCC 9345, Arcanobacterium haemolyticum CIP 103370, Arcanobacterium haemolyticum DSM 20595, Arcanobacterium haemolyticum str. DSM 20595, Arcanobacterium haemolyticum strain DSM 20595
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