STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Arch_0590Major facilitator superfamily MFS_1; COGs: COG2814 Arabinose efflux permease; InterPro IPR005829:IPR011701:IPR016196; KEGG: mlu:Mlut_15790 arabinose efflux permease family protein; PFAM: major facilitator superfamily MFS_1; SPTR: C2KMR3 Major facilitator superfamily MFS_1 transporter; PFAM: Major Facilitator Superfamily. (513 aa)    
Predicted Functional Partners:
Arch_0836
Major facilitator superfamily MFS_1; InterPro IPR016196:IPR011701; KEGG: xcb:XC_1279 MFS transporter; PFAM: major facilitator superfamily MFS_1; SPTR: C2BTC3 Major facilitator superfamily permease; PFAM: Major Facilitator Superfamily.
 
     0.701
Arch_0591
Transcriptional regulator, XRE family; InterPro IPR001387:IPR010982; KEGG: wpi:WPa_0277 putative transcriptional regulator; PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; SPTR: C5VEB4 Putative uncharacterized protein.
     
 0.676
Arch_0163
Major facilitator superfamily MFS_1; COGs: COG2814 Arabinose efflux permease; InterPro IPR011701:IPR016196:IPR001958; KEGG: kse:Ksed_04650 arabinose efflux permease family protein; PFAM: major facilitator superfamily MFS_1; SPTR: C5VDV5 Permease, major facilitator family; PFAM: Major Facilitator Superfamily.
  
   
 0.524
Arch_0589
Amino acid permease-associated region; COGs: COG1113 Gamma-aminobutyrate permease and related permease; InterPro IPR004840:IPR004841:IPR002293; KEGG: cro:ROD_32621 D-serine/D-alanine/glycine transporter; PFAM: amino acid permease-associated region; SPTR: D1BCC7 Gamma-aminobutyrate permease-like transporter; PFAM: Amino acid permease.
       0.460
Arch_1769
Alpha/beta hydrolase fold-3 domain protein; COGs: COG0657 Esterase/lipase; InterPro IPR000073:IPR013094; KEGG: ami:Amir_4661 alpha/beta hydrolase fold-3 domain protein; PFAM: Alpha/beta hydrolase fold-3 domain protein; alpha/beta hydrolase fold; SPTR: D0WQ59 Hydrolase, alpha/beta fold family; PFAM: alpha/beta hydrolase fold.
 
 
 0.418
Your Current Organism:
Arcanobacterium haemolyticum
NCBI taxonomy Id: 644284
Other names: A. haemolyticum DSM 20595, Arcanobacterium haemolyticum ATCC 9345, Arcanobacterium haemolyticum CIP 103370, Arcanobacterium haemolyticum DSM 20595, Arcanobacterium haemolyticum str. DSM 20595, Arcanobacterium haemolyticum strain DSM 20595
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